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FMR1-AS1 FMR1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100126270, updated on 2-Mar-2021

Summary

Official Symbol
FMR1-AS1provided by HGNC
Official Full Name
FMR1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:39081
See related
Ensembl:ENSG00000268066 MIM:300805
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FMR4; ASFMR1; FMR1AS; FMR1-AS
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See FMR1-AS1 in Genome Data Viewer
Location:
Xq27.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210226 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (147909431..147911817, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (146990949..146993335, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene origin of replication upstream of FMR1 Neighboring gene uncharacterized LOC105373349 Neighboring gene origin of replication in 5' region of FMR1 Neighboring gene fragile site, folic acid type, rare, fra(X)(q27.3) A (macroorchidism, mental retardation) Neighboring gene FMRP translational regulator 1 Neighboring gene FMR1 neighbor Neighboring gene RNA, 5S ribosomal pseudogene 524

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Other Names

  • FMR1 antisense RNA 1 (head to head)
  • FMR1 antisense RNA 1 (non-protein coding)
  • antisense fragile X mental retardation protein variant A

Gene Ontology Provided by GOA

Process Evidence Code Pubs
negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024499.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longest transcript.
    Source sequence(s)
    EU251065
    Related
    ENST00000601841.1
  2. NR_024501.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an internal segment compared to variant 1.
    Source sequence(s)
    EU251066
    Related
    ENST00000594922.5
  3. NR_024502.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two internal segments compared to variant 1.
    Source sequence(s)
    EU251067
    Related
    ENST00000596112.5
  4. NR_024503.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks an internal segment compared to variant 1.
    Source sequence(s)
    EU251068
    Related
    ENST00000598667.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210226

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    147909431..147911817 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_024500.1: Suppressed sequence

    Description
    NR_024500.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
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