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Vmn2r2 vomeronasal 2, receptor 2 [ Mus musculus (house mouse) ]

Gene ID: 100125586, updated on 9-Mar-2023

Summary

Official Symbol
Vmn2r2provided by MGI
Official Full Name
vomeronasal 2, receptor 2provided by MGI
Primary source
MGI:MGI:3757666
See related
Ensembl:ENSMUSG00000043897 AllianceGenome:MGI:3757666
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable G protein-coupled receptor activity and olfactory receptor activity. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

See Vmn2r2 in Genome Data Viewer
Location:
3; 3 E1
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (64023151..64078348, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (64115730..64170917, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor, pseudogene 3 Neighboring gene vomeronasal 2, receptor 1 Neighboring gene predicted gene, 22165 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene vomeronasal 2, receptor 7 pseudogene Neighboring gene vomeronasal 2, receptor 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General protein information

Preferred Names
vomeronasal 2, receptor 2
Names
vomeronasal receptor Vmn2r2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001385025.1NP_001371954.1  vomeronasal 2, receptor 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC126803
    Consensus CDS
    CCDS50919.1
    UniProtKB/TrEMBL
    L7N2E9
    Related
    ENSMUSP00000135110.2, ENSMUST00000177151.9
    Conserved Domains (3) summary
    cd15280
    Location:615867
    7tmC_V2R-like; vomeronasal type-2 receptor-like proteins, member of the class C family of seven-transmembrane G protein-coupled receptors
    cd06364
    Location:48534
    PBP1_CaSR; ligand-binding domain of the CaSR calcium-sensing receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
    pfam07562
    Location:542595
    NCD3G; Nine Cysteines Domain of family 3 GPCR

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    64023151..64078348 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017319413.2XP_017174902.1  vomeronasal 2, receptor 2 isoform X2

    Conserved Domains (3) summary
    cd15280
    Location:454706
    7tmC_V2R-like; vomeronasal type-2 receptor-like proteins, member of the class C family of seven-transmembrane G protein-coupled receptors
    pfam07562
    Location:381434
    NCD3G; Nine Cysteines Domain of family 3 GPCR
    cl10011
    Location:1380
    Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily
  2. XM_030252330.2XP_030108190.1  vomeronasal 2, receptor 2 isoform X3

    Conserved Domains (3) summary
    cd15280
    Location:618870
    7tmC_V2R-like; vomeronasal type-2 receptor-like proteins, member of the class C family of seven-transmembrane G protein-coupled receptors
    pfam07562
    Location:545598
    NCD3G; Nine Cysteines Domain of family 3 GPCR
    cd06364
    Location:48537
    PBP1_CaSR; ligand-binding domain of the CaSR calcium-sensing receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
  3. XM_017319412.3XP_017174901.1  vomeronasal 2, receptor 2 isoform X1

    Conserved Domains (3) summary
    cd15280
    Location:468720
    7tmC_V2R-like; vomeronasal type-2 receptor-like proteins, member of the class C family of seven-transmembrane G protein-coupled receptors
    pfam07562
    Location:395448
    NCD3G; Nine Cysteines Domain of family 3 GPCR
    cl10011
    Location:5394
    Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001104592.1: Suppressed sequence

    Description
    NM_001104592.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.