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arntl2 aryl hydrocarbon receptor nuclear translocator like 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100124875, updated on 20-Jun-2018

Summary

Symbol
arntl2provided by Xenbase
Full Name
aryl hydrocarbon receptor nuclear translocator like 2provided by Xenbase
Primary source
Xenbase:XB-GENE-6454872
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
clif; mop9; bmal2; pasd9; bhlhe6
Annotation information
Annotation category: partial on reference assembly

Genomic context

See arntl2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683782.1 (22720..51247)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668234.1 (105328..133552)

NW_016683782.1Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase 38 like Neighboring gene plakophilin 2 Neighboring gene tubulin tyrosine ligase like 1

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
aryl hydrocarbon receptor nuclear translocator-like protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102828.1NP_001096298.1  aryl hydrocarbon receptor nuclear translocator-like protein 2

    See identical proteins and their annotated locations for NP_001096298.1

    Status: PROVISIONAL

    Source sequence(s)
    BC135611
    UniProtKB/TrEMBL
    A4IHN9
    Conserved Domains (3) summary
    cd00083
    Location:70126
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:155243
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    cl25986
    Location:329434
    PAS_3; PAS fold

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NW_016683782.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    22720..51247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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