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CX3CR1 C-X3-C motif chemokine receptor 1 [ Bos taurus (domestic cattle) ]

Gene ID: 100124525, updated on 5-Sep-2025
Official Symbol
CX3CR1provided by VGNC
Official Full Name
C-X3-C motif chemokine receptor 1provided by VGNC
Primary source
VGNC:VGNC:27845
See related
BGD:BT11791; EnsemblRapid:ENSBTAG00070024435
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See CX3CR1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (12569309..12583388, complement)

Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene cysteine and serine rich nuclear protein 1 Neighboring gene C-C motif chemokine receptor 8 Neighboring gene xin actin binding repeat containing 1 Neighboring gene alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6-like Neighboring gene acyl-coenzyme A thioesterase THEM4

Genomic Sequence:
NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. The bovine chemokine receptors and their mRNA abundance in mononuclear phagocytes. Widdison S, et al. BMC Genomics, 2010 Jul 19. PMID 20642824, Free PMC Article
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Clone Names

  • MGC140194

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-C chemokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables C-C chemokine receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables C-X3-C chemokine receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
CX3C chemokine receptor 1
Names
chemokine (C-X3-C motif) receptor 1
fractalkine receptor

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102558.2 → NP_001096028.1  CX3C chemokine receptor 1

    See identical proteins and their annotated locations for NP_001096028.1

    Status: PROVISIONAL

    Source sequence(s)
    BC148890
    UniProtKB/Swiss-Prot
    A6QNL7
    UniProtKB/TrEMBL
    D9ZDE8
    Related
    ENSBTAP00070033116.1, ENSBTAT00070055202.1
    Conserved Domains (1) summary
    PHA03087
    Location:3 → 301
    PHA03087; G protein-coupled chemokine receptor-like protein; Provisional

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    12569309..12583388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005222366.5 → XP_005222423.1  CX3C chemokine receptor 1 isoform X3

    UniProtKB/TrEMBL
    D9ZDE8
    Conserved Domains (1) summary
    PHA02834
    Location:15 → 315
    PHA02834; chemokine receptor-like protein; Provisional

  2. XM_024982364.2 → XP_024838132.1  CX3C chemokine receptor 1 isoform X2

    UniProtKB/TrEMBL
    D9ZDE8
    Conserved Domains (1) summary
    cd15186
    Location:45 → 317
    7tmA_CX3CR1; CX3C chemokine receptor 1, member of the class A family of seven-transmembrane G protein-coupled receptors

  3. XM_005222364.5 → XP_005222421.1  CX3C chemokine receptor 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LIB2, D9ZDE8
    Conserved Domains (1) summary
    PHA03087
    Location:52 → 350
    PHA03087; G protein-coupled chemokine receptor-like protein; Provisional

  4. XM_059879451.1 → XP_059735434.1  CX3C chemokine receptor 1 isoform X4

    UniProtKB/Swiss-Prot
    A6QNL7
    UniProtKB/TrEMBL
    D9ZDE8
    Related
    ENSBTAP00070033125.1, ENSBTAT00070055212.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6QNL7.1 GenPept UniProtKB/Swiss-Prot:A6QNL7

Gene LinkOut

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