Format

Send to:

Choose Destination

uba3 ubiquitin like modifier activating enzyme 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100124303, updated on 20-Jun-2018

Summary

Official Symbol
uba3provided by Xenbase
Official Full Name
ubiquitin like modifier activating enzyme 3provided by Xenbase
Primary source
Xenbase:XB-GENE-947291
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
huba3; ube1c
Orthologs

Genomic context

See uba3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
18
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (131397221..131420381)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668236.1 (130887924..130911088)

Chromosome 4 - NC_030680.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100489013 Neighboring gene uncharacterized LOC100488689 Neighboring gene TATA element modulatory factor 1 Neighboring gene EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

General protein information

Preferred Names
NEDD8-activating enzyme E1 catalytic subunit
Names
ubiquitin-activating enzyme E1C (UBA3 homolog)
NP_001116198.1
XP_012815865.1
XP_012815866.1
XP_012815867.1
XP_017948366.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001122726.1NP_001116198.1  NEDD8-activating enzyme E1 catalytic subunit

    See identical proteins and their annotated locations for NP_001116198.1

    Status: PROVISIONAL

    Source sequence(s)
    BC160449
    UniProtKB/TrEMBL
    B1H132
    Conserved Domains (3) summary
    cd01488
    Location:57354
    Uba3_RUB; Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to ...
    pfam00899
    Location:53227
    ThiF; ThiF family
    pfam08825
    Location:362447
    E2_bind; E2 binding domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030680.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    131397221..131420381
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012960411.2XP_012815865.1  NEDD8-activating enzyme E1 catalytic subunit isoform X1

    Conserved Domains (3) summary
    cd01488
    Location:70367
    Uba3_RUB; Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to ...
    pfam00899
    Location:66240
    ThiF; ThiF family
    pfam08825
    Location:375460
    E2_bind; E2 binding domain
  2. XM_018092877.1XP_017948366.1  NEDD8-activating enzyme E1 catalytic subunit isoform X2

  3. XM_012960413.1XP_012815867.1  NEDD8-activating enzyme E1 catalytic subunit isoform X3

    See identical proteins and their annotated locations for XP_012815867.1

    UniProtKB/TrEMBL
    B5DFR3
    Conserved Domains (3) summary
    cd01488
    Location:50347
    Uba3_RUB; Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to ...
    pfam00899
    Location:46220
    ThiF; ThiF family
    pfam08825
    Location:355440
    E2_bind; E2 binding domain
  4. XM_012960412.1XP_012815866.1  NEDD8-activating enzyme E1 catalytic subunit isoform X2

    Conserved Domains (3) summary
    cd01488
    Location:57354
    Uba3_RUB; Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to ...
    pfam00899
    Location:53227
    ThiF; ThiF family
    pfam08825
    Location:362447
    E2_bind; E2 binding domain
Support Center