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nr1d1 nuclear receptor subfamily 1 group D member 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100101679, updated on 9-Oct-2019

Summary

Official Symbol
nr1d1provided by Xenbase
Official Full Name
nuclear receptor subfamily 1 group D member 1provided by Xenbase
Primary source
Xenbase:XB-GENE-478094
See related
Ensembl:ENSXETG00000004076
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ear1; hrev; ear-1; thra1; thral
Orthologs

Genomic context

See nr1d1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683386.1 (360010..368739, complement)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668245.1 (31826169..31834898, complement)

NW_016683386.1Genomic Context describing neighboring genes Neighboring gene colony stimulating factor 3 Neighboring gene thyroid hormone receptor alpha Neighboring gene male-specific lethal 1 homolog Neighboring gene CASC3, exon junction complex subunit

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

General protein information

Preferred Names
nuclear receptor subfamily 1 group D member 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100205.1NP_001093675.1  nuclear receptor subfamily 1 group D member 1

    See identical proteins and their annotated locations for NP_001093675.1

    Status: PROVISIONAL

    Source sequence(s)
    BC135990
    UniProtKB/TrEMBL
    A4IIE9
    Related
    ENSXETP00000024960.1, ENSXETT00000014208.1
    Conserved Domains (2) summary
    cd07166
    Location:110198
    NR_DBD_REV_ERB; DNA-binding domain of REV-ERB receptor-like is composed of two C4-type zinc fingers
    cl11397
    Location:331519
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NW_016683386.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    360010..368739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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