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vsx1 visual system homeobox 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100101658, updated on 9-Oct-2019

Summary

Official Symbol
vsx1provided by Xenbase
Official Full Name
visual system homeobox 1provided by Xenbase
Primary source
Xenbase:XB-GENE-853166
See related
Ensembl:ENSXETG00000007312
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ppd; ktcn; ppcd; rinx; Xvsx1
Orthologs

Genomic context

See vsx1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (49310018..49316276, complement)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668237.1 (87411715..87417971)

Chromosome 5 - NC_030681.1Genomic Context describing neighboring genes Neighboring gene barrier-to-autointegration factor-like protein Neighboring gene acyl-CoA synthetase short chain family member 1 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 6 (putative) Neighboring gene adipocyte plasma membrane associated protein

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100200.1NP_001093670.1  visual system homeobox 1

    See identical proteins and their annotated locations for NP_001093670.1

    Status: PROVISIONAL

    Source sequence(s)
    BC135613
    UniProtKB/TrEMBL
    A4IHP1
    Related
    ENSXETP00000008187.1, ENSXETT00000019557.1
    Conserved Domains (1) summary
    pfam00046
    Location:153206
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030681.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    49310018..49316276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012962573.2XP_012818027.1  visual system homeobox 1 isoform X1

    See identical proteins and their annotated locations for XP_012818027.1

    UniProtKB/TrEMBL
    A4IHP1
    Conserved Domains (1) summary
    pfam00046
    Location:153206
    Homeobox; Homeobox domain
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