U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COL3A1 collagen type III alpha 1 chain [ Ovis aries (sheep) ]

Gene ID: 100101231, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
COL3A1
Gene description
collagen type III alpha 1 chain
See related
EnsemblRapid:ENSOARG00020013296
Gene type
protein coding
RefSeq status
MODEL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See COL3A1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
51
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 2 NC_056055.1 (120362888..120403111, complement)

Chromosome 2 - NC_056055.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132659193 Neighboring gene collagen type V alpha 2 chain Neighboring gene large ribosomal subunit protein eL33-like Neighboring gene ribonuclease P protein subunit p38-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_056055.1 Chromosome 2 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Ovis aries Rambouillet Genome sequencing and assembly
  • BioProject: PRJNA414087
  • Analysis date: Thu Jan 09 10:41:41 2025

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene expression profiling during increased fetal lung expansion identifies genes likely to regulate development of the distal airways. Sozo F, et al. Physiol Genomics, 2006 Jan 12. PMID 16249314
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
collagen alpha-1(III) chain
Names
collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056055.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    120362888..120403111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004004514.5 → XP_004004563.1  collagen alpha-1(III) chain

    See identical proteins and their annotated locations for XP_004004563.1

    UniProtKB/TrEMBL
    A0A6P3E9J1, W5Q4S0
    Related
    ENSOARP00020016868.1, ENSOART00020020383.2
    Conserved Domains (3) summary
    pfam01391
    Location:235 → 294
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:32 → 88
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1234 → 1466
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials