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ASCL1 achaete-scute family bHLH transcription factor 1 [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100084932, updated on 30-Apr-2024
Gene symbol
ASCL1
Gene description
achaete-scute family bHLH transcription factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
all
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See ASCL1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
2
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 14 NC_041741.1 (39124418..39125966)

Chromosome 14 - NC_041741.1Genomic Context describing neighboring genes Neighboring gene phenylalanine hydroxylase Neighboring gene small nucleolar RNA SNORA7 Neighboring gene uncharacterized LOC114816712 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene uncharacterized LOC114816425

Genomic Sequence:
NC_041741.1 Chromosome 14 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
achaete-scute homolog 1

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041741.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    39124418..39125966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029079300.1 → XP_028935133.1  achaete-scute homolog 1

    Conserved Domains (1) summary
    smart00353
    Location:143 → 185
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials