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Camta1 calmodulin binding transcription activator 1 [ Mus musculus (house mouse) ]

Gene ID: 100072, updated on 9-May-2024

Summary

Official Symbol
Camta1provided by MGI
Official Full Name
calmodulin binding transcription activator 1provided by MGI
Primary source
MGI:MGI:2140230
See related
Ensembl:ENSMUSG00000014592 AllianceGenome:MGI:2140230
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mKIAA0833; 1810059M14Rik; 2310058O09Rik
Summary
Enables sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within neuromuscular process controlling balance. Predicted to be located in cytosol and nucleolus. Predicted to be active in nucleus. Is expressed in central nervous system; early conceptus; ovary; and retina. Human ortholog(s) of this gene implicated in nonprogressive cerebellar ataxia with mental retardation. Orthologous to human CAMTA1 (calmodulin binding transcription activator 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in cerebellum adult (RPKM 11.3), frontal lobe adult (RPKM 8.0) and 16 other tissues See more
Orthologs
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Genomic context

See Camta1 in Genome Data Viewer
Location:
4 E2; 4 81.53 cM
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (151143980..151946225, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (151059523..151861768, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1294 Neighboring gene urotensin 2 Neighboring gene period circadian clock 3 Neighboring gene predicted gene, 38529 Neighboring gene STARR-positive B cell enhancer ABC_E8038 Neighboring gene vesicle-associated membrane protein 3 Neighboring gene STARR-seq mESC enhancer starr_12183 Neighboring gene predicted gene 13090 Neighboring gene predicted gene, 46899 Neighboring gene predicted gene, 52711 Neighboring gene STARR-seq mESC enhancer starr_12184 Neighboring gene predicted gene, 30422 Neighboring gene predicted gene, 53227 Neighboring gene STARR-seq mESC enhancer starr_12185 Neighboring gene STARR-seq mESC enhancer starr_12186 Neighboring gene STARR-seq mESC enhancer starr_12188 Neighboring gene predicted gene, 30344 Neighboring gene predicted gene, 38442 Neighboring gene predicted gene, 52712 Neighboring gene predicted gene, 52710 Neighboring gene RIKEN cDNA 9230110K08 gene Neighboring gene STARR-positive B cell enhancer ABC_E30 Neighboring gene predicted gene, 42357 Neighboring gene DnaJ heat shock protein family (Hsp40) member C11 Neighboring gene THAP domain containing, apoptosis associated protein 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (4)  1 citation

General gene information

Markers

Clone Names

  • KIAA0833

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables double-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables transcription coregulator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
calmodulin-binding transcription activator 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081557.3NP_001075026.1  calmodulin-binding transcription activator 1 isoform 1

    See identical proteins and their annotated locations for NP_001075026.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AL606967, AL606986, AL607143, AL611931, AL732550
    Consensus CDS
    CCDS38981.1
    UniProtKB/Swiss-Prot
    A2A891, A2A892, A2A896, A2A897, A2A898, B2KGR3, B2KGR4, Q80TQ8
    UniProtKB/TrEMBL
    B9EK89
    Related
    ENSMUSP00000054804.8, ENSMUST00000049790.14
    Conserved Domains (5) summary
    smart01076
    Location:67183
    CG-1; CG-1 domains are highly conserved domains of about 130 amino-acid residues
    cd00204
    Location:10671165
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:875954
    TIG; IPT/TIG domain
    pfam13637
    Location:11141165
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:10661109
    ANK; ANK repeat [structural motif]
  2. NM_001195565.1NP_001182494.1  calmodulin-binding transcription activator 1 isoform 3

    See identical proteins and their annotated locations for NP_001182494.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate, 3' terminal exon compared to variant 1. This results in a much shorter protein (isoform 3) that lacks the ankyrin repeats and calmodulin-binding motifs, compared to isoform 1.
    Source sequence(s)
    AK034038, AK158710, AL611931, AL662818
    Consensus CDS
    CCDS57315.1
    UniProtKB/TrEMBL
    Q3TYE0
    Related
    ENSMUSP00000134684.2, ENSMUST00000153938.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    151143980..151946225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030253015.2XP_030108875.1  calmodulin-binding transcription activator 1 isoform X5

    UniProtKB/TrEMBL
    B9EK89
    Conserved Domains (3) summary
    sd00045
    Location:846889
    ANK; ANK repeat [structural motif]
    pfam01833
    Location:655734
    TIG; IPT/TIG domain
    pfam12796
    Location:851945
    Ank_2; Ankyrin repeats (3 copies)
  2. XM_030253016.2XP_030108876.1  calmodulin-binding transcription activator 1 isoform X6

    UniProtKB/TrEMBL
    B9EK89
    Conserved Domains (3) summary
    sd00045
    Location:846889
    ANK; ANK repeat [structural motif]
    pfam01833
    Location:655734
    TIG; IPT/TIG domain
    pfam12796
    Location:851945
    Ank_2; Ankyrin repeats (3 copies)
  3. XM_036163534.1XP_036019427.1  calmodulin-binding transcription activator 1 isoform X4

    UniProtKB/TrEMBL
    B9EK89
    Conserved Domains (3) summary
    sd00045
    Location:846889
    ANK; ANK repeat [structural motif]
    pfam01833
    Location:655734
    TIG; IPT/TIG domain
    pfam12796
    Location:851943
    Ank_2; Ankyrin repeats (3 copies)
  4. XM_030253014.2XP_030108874.1  calmodulin-binding transcription activator 1 isoform X3

    UniProtKB/TrEMBL
    B9EK89
    Conserved Domains (3) summary
    sd00045
    Location:846889
    ANK; ANK repeat [structural motif]
    pfam01833
    Location:655734
    TIG; IPT/TIG domain
    pfam12796
    Location:851945
    Ank_2; Ankyrin repeats (3 copies)
  5. XM_030253021.2XP_030108881.1  calmodulin-binding transcription activator 1 isoform X11

    UniProtKB/TrEMBL
    B9EK89
    Conserved Domains (3) summary
    sd00045
    Location:846889
    ANK; ANK repeat [structural motif]
    pfam01833
    Location:655734
    TIG; IPT/TIG domain
    pfam12796
    Location:851945
    Ank_2; Ankyrin repeats (3 copies)
  6. XM_030253019.2XP_030108879.1  calmodulin-binding transcription activator 1 isoform X9

    UniProtKB/TrEMBL
    B9EK89
    Conserved Domains (3) summary
    sd00045
    Location:846889
    ANK; ANK repeat [structural motif]
    pfam01833
    Location:655734
    TIG; IPT/TIG domain
    pfam12796
    Location:851945
    Ank_2; Ankyrin repeats (3 copies)
  7. XM_030253038.2XP_030108898.1  calmodulin-binding transcription activator 1 isoform X18

    Conserved Domains (3) summary
    COG5022
    Location:435561
    COG5022; Myosin heavy chain [General function prediction only]
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  8. XM_030253028.1XP_030108888.1  calmodulin-binding transcription activator 1 isoform X15

    Conserved Domains (3) summary
    pfam05109
    Location:227379
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  9. XM_030253041.2XP_030108901.1  calmodulin-binding transcription activator 1 isoform X18

    Conserved Domains (3) summary
    COG5022
    Location:435561
    COG5022; Myosin heavy chain [General function prediction only]
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  10. XM_030253031.1XP_030108891.1  calmodulin-binding transcription activator 1 isoform X15

    Conserved Domains (3) summary
    pfam05109
    Location:227379
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  11. XM_030253037.2XP_030108897.1  calmodulin-binding transcription activator 1 isoform X18

    Conserved Domains (3) summary
    COG5022
    Location:435561
    COG5022; Myosin heavy chain [General function prediction only]
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  12. XM_030253027.2XP_030108887.1  calmodulin-binding transcription activator 1 isoform X15

    Conserved Domains (3) summary
    pfam05109
    Location:227379
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  13. XM_030253030.1XP_030108890.1  calmodulin-binding transcription activator 1 isoform X15

    Conserved Domains (3) summary
    pfam05109
    Location:227379
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  14. XM_030253040.2XP_030108900.1  calmodulin-binding transcription activator 1 isoform X18

    Conserved Domains (3) summary
    COG5022
    Location:435561
    COG5022; Myosin heavy chain [General function prediction only]
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  15. XM_030253046.2XP_030108906.1  calmodulin-binding transcription activator 1 isoform X20

    Conserved Domains (2) summary
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  16. XM_030253044.1XP_030108904.1  calmodulin-binding transcription activator 1 isoform X19

    Related
    ENSMUSP00000101293.2, ENSMUST00000105668.8
    Conserved Domains (3) summary
    COG5022
    Location:435561
    COG5022; Myosin heavy chain [General function prediction only]
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  17. XM_030253045.2XP_030108905.1  calmodulin-binding transcription activator 1 isoform X20

    Related
    ENSMUSP00000101295.2, ENSMUST00000105670.8
    Conserved Domains (2) summary
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  18. XM_030253039.2XP_030108899.1  calmodulin-binding transcription activator 1 isoform X19

    Conserved Domains (3) summary
    COG5022
    Location:435561
    COG5022; Myosin heavy chain [General function prediction only]
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  19. XM_030253020.2XP_030108880.1  calmodulin-binding transcription activator 1 isoform X10

    UniProtKB/TrEMBL
    B9EK89
    Conserved Domains (3) summary
    sd00045
    Location:846889
    ANK; ANK repeat [structural motif]
    pfam01833
    Location:655734
    TIG; IPT/TIG domain
    pfam12796
    Location:851945
    Ank_2; Ankyrin repeats (3 copies)
  20. XM_030253042.2XP_030108902.1  calmodulin-binding transcription activator 1 isoform X19

    Conserved Domains (3) summary
    COG5022
    Location:435561
    COG5022; Myosin heavy chain [General function prediction only]
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  21. XM_036163536.1XP_036019429.1  calmodulin-binding transcription activator 1 isoform X16

    Conserved Domains (3) summary
    pfam05109
    Location:227379
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93185
    Ank_2; Ankyrin repeats (3 copies)
  22. XM_030253029.2XP_030108889.1  calmodulin-binding transcription activator 1 isoform X16

    Conserved Domains (3) summary
    pfam05109
    Location:227379
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93185
    Ank_2; Ankyrin repeats (3 copies)
  23. XM_030253043.2XP_030108903.1  calmodulin-binding transcription activator 1 isoform X19

    Conserved Domains (3) summary
    COG5022
    Location:435561
    COG5022; Myosin heavy chain [General function prediction only]
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  24. XM_030253032.2XP_030108892.1  calmodulin-binding transcription activator 1 isoform X16

    Conserved Domains (3) summary
    pfam05109
    Location:227379
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93185
    Ank_2; Ankyrin repeats (3 copies)
  25. XM_030253013.2XP_030108873.1  calmodulin-binding transcription activator 1 isoform X2

    UniProtKB/TrEMBL
    B9EK89
    Conserved Domains (3) summary
    sd00045
    Location:846889
    ANK; ANK repeat [structural motif]
    pfam01833
    Location:655734
    TIG; IPT/TIG domain
    pfam12796
    Location:851945
    Ank_2; Ankyrin repeats (3 copies)
  26. XM_030253018.2XP_030108878.1  calmodulin-binding transcription activator 1 isoform X8

    UniProtKB/TrEMBL
    B9EK89
    Conserved Domains (3) summary
    sd00045
    Location:846889
    ANK; ANK repeat [structural motif]
    pfam01833
    Location:655734
    TIG; IPT/TIG domain
    pfam12796
    Location:851945
    Ank_2; Ankyrin repeats (3 copies)
  27. XM_036163533.1XP_036019426.1  calmodulin-binding transcription activator 1 isoform X1

    UniProtKB/TrEMBL
    B9EK89
    Conserved Domains (3) summary
    sd00045
    Location:846889
    ANK; ANK repeat [structural motif]
    pfam01833
    Location:655734
    TIG; IPT/TIG domain
    pfam12796
    Location:851943
    Ank_2; Ankyrin repeats (3 copies)
  28. XM_030253017.2XP_030108877.1  calmodulin-binding transcription activator 1 isoform X7

    UniProtKB/TrEMBL
    B9EK89
    Conserved Domains (3) summary
    sd00045
    Location:846889
    ANK; ANK repeat [structural motif]
    pfam01833
    Location:655734
    TIG; IPT/TIG domain
    pfam12796
    Location:851945
    Ank_2; Ankyrin repeats (3 copies)
  29. XM_030253034.2XP_030108894.1  calmodulin-binding transcription activator 1 isoform X17

    Conserved Domains (3) summary
    COG5022
    Location:435561
    COG5022; Myosin heavy chain [General function prediction only]
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  30. XM_030253024.2XP_030108884.1  calmodulin-binding transcription activator 1 isoform X13

    Conserved Domains (4) summary
    COG5022
    Location:548674
    COG5022; Myosin heavy chain [General function prediction only]
    pfam05109
    Location:227379
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  31. XM_030253026.1XP_030108886.1  calmodulin-binding transcription activator 1 isoform X13

    Conserved Domains (4) summary
    COG5022
    Location:548674
    COG5022; Myosin heavy chain [General function prediction only]
    pfam05109
    Location:227379
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  32. XM_030253036.1XP_030108896.1  calmodulin-binding transcription activator 1 isoform X17

    Conserved Domains (3) summary
    COG5022
    Location:435561
    COG5022; Myosin heavy chain [General function prediction only]
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  33. XM_036163535.1XP_036019428.1  calmodulin-binding transcription activator 1 isoform X14

    Conserved Domains (3) summary
    pfam05109
    Location:227379
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93185
    Ank_2; Ankyrin repeats (3 copies)
  34. XM_030253023.2XP_030108883.1  calmodulin-binding transcription activator 1 isoform X13

    Conserved Domains (4) summary
    COG5022
    Location:548674
    COG5022; Myosin heavy chain [General function prediction only]
    pfam05109
    Location:227379
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  35. XM_030253035.2XP_030108895.1  calmodulin-binding transcription activator 1 isoform X17

    Conserved Domains (3) summary
    COG5022
    Location:435561
    COG5022; Myosin heavy chain [General function prediction only]
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  36. XM_030253025.1XP_030108885.1  calmodulin-binding transcription activator 1 isoform X13

    Conserved Domains (4) summary
    COG5022
    Location:548674
    COG5022; Myosin heavy chain [General function prediction only]
    pfam05109
    Location:227379
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  37. XM_030253033.2XP_030108893.1  calmodulin-binding transcription activator 1 isoform X17

    Conserved Domains (3) summary
    COG5022
    Location:435561
    COG5022; Myosin heavy chain [General function prediction only]
    sd00045
    Location:88131
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:93187
    Ank_2; Ankyrin repeats (3 copies)
  38. XM_030253022.2XP_030108882.1  calmodulin-binding transcription activator 1 isoform X12

    Conserved Domains (1) summary
    pfam01833
    Location:655734
    TIG; IPT/TIG domain
  39. XM_030253047.1XP_030108907.1  calmodulin-binding transcription activator 1 isoform X22

    Conserved Domains (1) summary
    cl04295
    Location:67147
    CG-1; CG-1 domain
  40. XM_017319880.2XP_017175369.1  calmodulin-binding transcription activator 1 isoform X21

    Conserved Domains (1) summary
    cl04295
    Location:67199
    CG-1; CG-1 domain

RNA

  1. XR_004941791.1 RNA Sequence

  2. XR_390718.3 RNA Sequence

  3. XR_881416.2 RNA Sequence

  4. XR_003954856.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001166021.1: Suppressed sequence

    Description
    NM_001166021.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.