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HPS5 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 [ Equus caballus (horse) ]

Gene ID: 100071855, updated on 5-Sep-2025
Official Symbol
HPS5provided by VGNC
Official Full Name
HPS5 biogenesis of lysosomal organelles complex 2 subunit 2provided by VGNC
Primary source
VGNC:VGNC:18863
See related
Ensembl:ENSECAG00000015720
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
all
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See HPS5 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_12 current TB-T2T (GCF_041296265.1) 7 NC_091690.1 (88958322..88994784, complement)
RS_2024_08 previous assembly EquCab3.0 (GCF_002863925.1) 7 NC_009150.3 (88737185..88773437, complement)

Chromosome 7 - NC_091690.1Genomic Context describing neighboring genes Neighboring gene serum amyloid A protein Neighboring gene uncharacterized LOC138925051 Neighboring gene general transcription factor IIH subunit 1 Neighboring gene lactate dehydrogenase A Neighboring gene lactate dehydrogenase C

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Thoroughbred Stallion gene expression
  • BioProject: PRJEB53382
  • Analysis date: Mon Jan 06 09:53:19 2025

Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental pigmentation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
BLOC-2 complex member HPS5

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001309199.3 → NP_001296128.3  BLOC-2 complex member HPS5

    Status: PROVISIONAL

    Source sequence(s)
    JBFNWK010000007
    UniProtKB/TrEMBL
    F6TX07
    Related
    ENSECAP00000046065.2, ENSECAT00000045589.2

RefSeqs of Annotated Genomes: GCF_041296265.1-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TB-T2T Primary Assembly

Genomic

  1. NC_091690.1 Reference TB-T2T Primary Assembly

    Range
    88958322..88994784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001504961.6 → XP_001505011.3  BLOC-2 complex member HPS5 isoform X1

    UniProtKB/TrEMBL
    F6TX07

  2. XM_023644166.2 → XP_023499934.2  BLOC-2 complex member HPS5 isoform X1

    UniProtKB/TrEMBL
    F6TX07

  3. XM_005612207.4 → XP_005612264.3  BLOC-2 complex member HPS5 isoform X1

    UniProtKB/TrEMBL
    F6TX07

  4. XM_023644167.2 → XP_023499935.2  BLOC-2 complex member HPS5 isoform X1

    UniProtKB/TrEMBL
    F6TX07

  5. XM_070272192.1 → XP_070128293.1  BLOC-2 complex member HPS5 isoform X2

    UniProtKB/TrEMBL
    F6TX07

  6. XM_014741500.3 → XP_014596986.3  BLOC-2 complex member HPS5 isoform X2

    UniProtKB/TrEMBL
    F6TX07

  7. XM_070272189.1 → XP_070128290.1  BLOC-2 complex member HPS5 isoform X2

    UniProtKB/TrEMBL
    F6TX07

  8. XM_070272191.1 → XP_070128292.1  BLOC-2 complex member HPS5 isoform X2

    UniProtKB/TrEMBL
    F6TX07
Nucleotide Protein
Heading Accession and Version

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