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SLC36A1 solute carrier family 36 member 1 [ Equus caballus (horse) ]

Gene ID: 100071523, updated on 17-Aug-2024

Summary

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Official Symbol
SLC36A1provided by VGNC
Official Full Name
solute carrier family 36 member 1provided by VGNC
Primary source
VGNC:VGNC:23180
See related
Ensembl:ENSECAG00000036174
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
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Genomic context

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See SLC36A1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) Unplaced Scaffold NW_019643139.1 (54050..97667)

NW_019643139.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111771888 Neighboring gene protocadherin Fat 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019643139 Unplaced Scaffold Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Missense mutation in exon 2 of SLC36A1 responsible for champagne dilution in horses. Cook D, et al. PLoS Genet, 2008 Sep 19. PMID 18802473, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-alanine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables L-proline transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amino acid:proton symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-alanine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proline transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proton-coupled amino acid transporter 1
Names
solute carrier family 36 (proton/amino acid symporter), member 1
solute carrier family 36 member A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NW_019643139.1 Reference EquCab3.0 Primary Assembly

    Range
    54050..97667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001501301.5 → XP_001501351.2  proton-coupled amino acid transporter 1 isoform X2

    See identical proteins and their annotated locations for XP_001501351.2

    UniProtKB/TrEMBL
    A0A3Q2GSH8, A0A3Q2LRH1, A0A9L0TU77, F6SNG3
    Related
    ENSECAP00000023231.3, ENSECAT00000056010.3
    Conserved Domains (1) summary
    cl00456
    Location:47 → 453
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_023634777.1 → XP_023490545.1  proton-coupled amino acid transporter 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2GYQ2
    Conserved Domains (1) summary
    cl00456
    Location:61 → 346
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. XM_023634775.1 → XP_023490543.1  proton-coupled amino acid transporter 1 isoform X1

    UniProtKB/TrEMBL
    A0A9L0TU77
    Conserved Domains (1) summary
    cl00456
    Location:61 → 467
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  4. XM_023634776.1 → XP_023490544.1  proton-coupled amino acid transporter 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2GSH8, A0A3Q2LRH1, A0A9L0TU77, F6SNG3
    Conserved Domains (1) summary
    cl00456
    Location:47 → 453
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RNA

  1. XR_002805780.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials