Format

Send to:

Choose Destination

NCBP1 nuclear cap binding protein subunit 1 [ Equus caballus (horse) ]

Gene ID: 100064523, updated on 26-Sep-2018

Summary

Official Symbol
NCBP1provided by VGNC
Official Full Name
nuclear cap binding protein subunit 1provided by VGNC
Primary source
VGNC:VGNC:20581
See related
Ensembl:ENSECAG00000013847
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs

Genomic context

See NCBP1 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
24
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 25 NC_009168.3 (4683693..4733728)
102 previous assembly EquCab2.0 (GCF_000002305.2) 25 NC_009168.2 (4648999..4683663)

Chromosome 25 - NC_009168.3Genomic Context describing neighboring genes Neighboring gene tropomodulin 1 Neighboring gene uncharacterized LOC111770686 Neighboring gene thiosulfate sulfurtransferase like domain containing 2 Neighboring gene XPA, DNA damage recognition and repair factor Neighboring gene 40S ribosomal protein S29 pseudogene

Genomic regions, transcripts, and products

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Cap binding complex, organism-specific biosystem (from KEGG)
    Cap binding complex, organism-specific biosystemStructural complex; Genetic information processing; Spliceosome
  • Cap binding complex, conserved biosystem (from KEGG)
    Cap binding complex, conserved biosystemStructural complex; Genetic information processing; Spliceosome
  • RNA transport, organism-specific biosystem (from KEGG)
    RNA transport, organism-specific biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
  • RNA transport, conserved biosystem (from KEGG)
    RNA transport, conserved biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
  • Spliceosome, organism-specific biosystem (from KEGG)
    Spliceosome, organism-specific biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
  • Spliceosome, conserved biosystem (from KEGG)
    Spliceosome, conserved biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
  • mRNA surveillance pathway, organism-specific biosystem (from KEGG)
    mRNA surveillance pathway, organism-specific biosystemThe mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go ...
  • mRNA surveillance pathway, conserved biosystem (from KEGG)
    mRNA surveillance pathway, conserved biosystemThe mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go ...

General protein information

Preferred Names
nuclear cap-binding protein subunit 1
Names
nuclear cap binding protein subunit 1, 80kDa

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009168.3 Reference EquCab3.0 Primary Assembly

    Range
    4683693..4733728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023629703.1XP_023485471.1  nuclear cap-binding protein subunit 1 isoform X2

    Conserved Domains (3) summary
    smart00543
    Location:28240
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:351470
    MIF4G_like; MIF4G like
    pfam09090
    Location:485759
    MIF4G_like_2; MIF4G like
  2. XM_005605641.3XP_005605698.1  nuclear cap-binding protein subunit 1 isoform X1

    Related
    ENSECAP00000012090.1
    Conserved Domains (3) summary
    smart00543
    Location:31243
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:354473
    MIF4G_like; MIF4G like
    pfam09090
    Location:494757
    MIF4G_like_2; MIF4G like
  3. XM_023629704.1XP_023485472.1  nuclear cap-binding protein subunit 1 isoform X3

    Conserved Domains (3) summary
    smart00543
    Location:9173
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:284403
    MIF4G_like; MIF4G like
    pfam09090
    Location:418692
    MIF4G_like_2; MIF4G like
Support Center