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SLC5A3 solute carrier family 5 member 3 [ Equus caballus (horse) ]

Gene ID: 100052070, updated on 18-Sep-2024

Summary

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Gene symbol
SLC5A3
Gene description
solute carrier family 5 member 3
See related
Ensembl:ENSECAG00000059657
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See SLC5A3 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 26 NC_009169.3 (31869233..31904230)

Chromosome 26 - NC_009169.3Genomic Context describing neighboring genes Neighboring gene intersectin 1 Neighboring gene ATP synthase peripheral stalk subunit OSCP Neighboring gene mitochondrial ribosomal protein S6 Neighboring gene uncharacterized LOC111770795 Neighboring gene potassium voltage-gated channel subfamily E regulatory subunit 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009169.3 Chromosome 26 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of a mutation associated with fatal Foal Immunodeficiency Syndrome in the Fell and Dales pony. Fox-Clipsham LY, et al. PLoS Genet, 2011 Jul. PMID 21750681, Free PMC Article
  2. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-glucose:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inositol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in myo-inositol transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium/myo-inositol cotransporter
Names
solute carrier family 5 (sodium/myo-inositol cotransporter), member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247992.1 → NP_001234921.1  sodium/myo-inositol cotransporter

    See identical proteins and their annotated locations for NP_001234921.1

    Status: VALIDATED

    Source sequence(s)
    PJAA01000027
    UniProtKB/TrEMBL
    A0A9L0SUE0
    Related
    ENSECAP00000078573.1, ENSECAT00000133636.1
    Conserved Domains (1) summary
    cd11491
    Location:9 → 718
    SLC5sbd_SMIT; Na(+)/myo-inositol cotransporter SMIT and related proteins; solute-binding domain

RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009169.3 Reference EquCab3.0 Primary Assembly

    Range
    31869233..31904230
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023629862.1 → XP_023485630.1  sodium/myo-inositol cotransporter isoform X1

    UniProtKB/TrEMBL
    A0A9L0SUE0
    Conserved Domains (1) summary
    cd11491
    Location:9 → 718
    SLC5sbd_SMIT; Na(+)/myo-inositol cotransporter SMIT and related proteins; solute-binding domain

  2. XM_023629864.1 → XP_023485632.1  sodium/myo-inositol cotransporter isoform X1

    UniProtKB/TrEMBL
    A0A9L0SUE0
    Related
    ENSECAP00000069711.1, ENSECAT00000110320.1
    Conserved Domains (1) summary
    cd11491
    Location:9 → 718
    SLC5sbd_SMIT; Na(+)/myo-inositol cotransporter SMIT and related proteins; solute-binding domain

  3. XM_023629863.1 → XP_023485631.1  sodium/myo-inositol cotransporter isoform X1

    UniProtKB/TrEMBL
    A0A9L0SUE0
    Related
    ENSECAP00000057995.1, ENSECAT00000090179.1
    Conserved Domains (1) summary
    cd11491
    Location:9 → 718
    SLC5sbd_SMIT; Na(+)/myo-inositol cotransporter SMIT and related proteins; solute-binding domain
Nucleotide Protein
Heading Accession and Version

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