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PDX1 pancreatic and duodenal homeobox 1 [ Equus caballus (horse) ]

Gene ID: 100051336, updated on 18-Dec-2024

Summary

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Official Symbol
PDX1provided by VGNC
Official Full Name
pancreatic and duodenal homeobox 1provided by VGNC
Primary source
VGNC:VGNC:21285
See related
Ensembl:ENSECAG00000000679
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See PDX1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_12 current TB-T2T (GCF_041296265.1) 17 NC_091700.1 (25061366..25068933)
RS_2024_08 previous assembly EquCab3.0 (GCF_002863925.1) 17 NC_009160.3 (7701838..7707505)

Chromosome 17 - NC_091700.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase I and III subunit D Neighboring gene GS homeobox 1 Neighboring gene caudal type homeobox 2 Neighboring gene ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Thoroughbred Stallion gene expression
  • BioProject: PRJEB53382
  • Analysis date: Mon Jan 06 09:53:19 2025

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in type B pancreatic cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pancreas/duodenum homeobox protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_041296265.1-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TB-T2T Primary Assembly

Genomic

  1. NC_091700.1 Reference TB-T2T Primary Assembly

    Range
    25061366..25068933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001492067.3 → XP_001492117.2  pancreas/duodenum homeobox protein 1

    UniProtKB/TrEMBL
    F7CBH8
    Related
    ENSECAP00000000423.2
    Conserved Domains (1) summary
    pfam00046
    Location:148 → 201
    Homeobox; Homeobox domain
Nucleotide Protein
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