Format

Send to:

Choose Destination

REJ6 receptor for egg jelly 6 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 100048988, updated on 8-Apr-2017

Summary

Gene symbol
REJ6
Gene description
receptor for egg jelly 6
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus

Genomic context

See REJ6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
101 current Spur_4.2 (GCF_000002235.4) Unplaced Scaffold NW_011993422.1 (317491..372612, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577336.1 (402994..456330)

NW_011993422.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain phosphoinositide-interacting protein 3 Neighboring gene enoyl CoA hydratase, short chain, 1, mitochondrial Neighboring gene josephin-2 Neighboring gene 4-aminobutyrate aminotransferase, mitochondrial

Genomic regions, transcripts, and products

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098460.1NP_001091930.1  receptor for egg jelly 6 precursor

    See identical proteins and their annotated locations for NP_001091930.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ988049
    UniProtKB/TrEMBL
    A0FEM4
    Conserved Domains (9) summary
    smart00303
    Location:23692414
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00089
    Location:413484
    PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
    cd00146
    Location:799853
    PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...
    cd01752
    Location:24752596
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam00801
    Location:9611033
    PKD; PKD domain
    pfam01822
    Location:261338
    WSC; WSC domain
    pfam02010
    Location:14821942
    REJ; REJ domain
    pfam07695
    Location:32143379
    7TMR-DISM_7TM; 7TM diverse intracellular signalling
    pfam08016
    Location:29843427
    PKD_channel; Polycystin cation channel

RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_4.2 Primary Assembly

Genomic

  1. NW_011993422.1 Reference Spur_4.2 Primary Assembly

    Range
    317491..372612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011681065.1XP_011679367.1  receptor for egg jelly 6 isoform X1

    Conserved Domains (7) summary
    smart00303
    Location:23672412
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00089
    Location:413484
    PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
    cd00146
    Location:790853
    PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...
    cd01752
    Location:24732594
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam00801
    Location:9611033
    PKD; PKD domain
    pfam01822
    Location:261338
    WSC; WSC domain
    pfam02010
    Location:14821940
    REJ; REJ domain
Support Center