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Amy2a2 amylase 2a2 [ Mus musculus (house mouse) ]

Gene ID: 100043688, updated on 7-Jan-2018

Summary

Official Symbol
Amy2a2provided by MGI
Official Full Name
amylase 2a2provided by MGI
Primary source
MGI:MGI:3711220
See related
Ensembl:ENSMUSG00000096569 Vega:OTTMUSG00000022431
Gene type
protein coding
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mAmy2-5
Expression
Biased expression in spleen adult (RPKM 519.8), small intestine adult (RPKM 402.2) and 2 other tissues See more

Genomic context

See Amy2a2 in Genome Data Viewer
Location:
3 F3; 3
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (113345049..113356658, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (113147967..113159576, complement)

Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene amylase 2a4 Neighboring gene amylase 2a3 Neighboring gene amylase 2a1 Neighboring gene predicted gene, 46820

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
alpha-amylase activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
amylase 2a2
Names
amylase 2a2, pancreatic

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001160152.1NP_001153624.1  amylase 2a2 precursor

    See identical proteins and their annotated locations for NP_001153624.1

    Status: INFERRED

    Source sequence(s)
    AC161580
    Consensus CDS
    CCDS51056.1
    UniProtKB/Swiss-Prot
    P00688
    Related
    ENSMUSP00000096264.3, OTTMUSP00000025505, ENSMUST00000098667.4, OTTMUST00000053623
    Conserved Domains (3) summary
    cd11317
    Location:25413
    AmyAc_bac_euk_AmyA; Alpha amylase catalytic domain found in bacterial and eukaryotic Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
    smart00632
    Location:420507
    Aamy_C; Aamy_C domain
    COG0366
    Location:46344
    AmyA; Glycosidase [Carbohydrate transport and metabolism]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

    Range
    113345049..113356658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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