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6030469F06Rik RIKEN cDNA 6030469F06 gene [ Mus musculus (house mouse) ]

Gene ID: 100043065, updated on 22-Oct-2024

Summary

Official Symbol
6030469F06Rikprovided by MGI
Official Full Name
RIKEN cDNA 6030469F06 geneprovided by MGI
Primary source
MGI:MGI:3588235
See related
Ensembl:ENSMUSG00000121864 AllianceGenome:MGI:3588235
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Annotation information
Note: This gene was thought to be a pseudogene, but based on the AK134407.1 sequence alignment to this locus and to the human NM_007356.2 (LAMB4), and synteny data, this gene is probably the mouse Lamb4. Compared to human NM_007356.2 (34 exons), the 4-exon AK134407.1 is very partial. Because of lacking of sufficient data, this gene is currently represented as non-coding. [30 Apr 2013]
Expression
Low expression observed in reference dataset See more
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Genomic context

See 6030469F06Rik in Genome Data Viewer
Location:
12 A2; 12 13.19 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (31218861..31235921)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (31168862..31185922)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40361 Neighboring gene SCAN domain containing 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_31848 Neighboring gene ribosomal protein S7 pseudogene Neighboring gene STARR-seq mESC enhancer starr_31850 Neighboring gene predicted gene 6993

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_102715.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK134407
    Related
    ENSMUST00000218473.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    31218861..31235921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_013336.1: Suppressed sequence

    Description
    NG_013336.1: This RefSeq was permanently suppressed because it is now thought that this gene is not a pseudogene.
  2. NM_001034058.1: Suppressed sequence

    Description
    NM_001034058.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.