U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

1110002L01Rik RIKEN cDNA 1110002L01 gene [ Mus musculus (house mouse) ]

Gene ID: 100043040, updated on 8-Feb-2024

Summary

Official Symbol
1110002L01Rikprovided by MGI
Official Full Name
RIKEN cDNA 1110002L01 geneprovided by MGI
Primary source
MGI:MGI:1915821
See related
Ensembl:ENSMUSG00000071456 AllianceGenome:MGI:1915821
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in CNS E18 (RPKM 14.9), whole brain E14.5 (RPKM 12.9) and 26 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See 1110002L01Rik in Genome Data Viewer
Location:
12 A1.1; 12 1.79 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (3453883..3476747, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (3403883..3426747, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26520 Neighboring gene STARR-positive B cell enhancer ABC_E9852 Neighboring gene RIKEN cDNA I920046F24 gene Neighboring gene kinesin family member 3C Neighboring gene STARR-seq mESC enhancer starr_31408 Neighboring gene STARR-positive B cell enhancer ABC_E4022 Neighboring gene STARR-positive B cell enhancer mm9_chr12:3427648-3427949 Neighboring gene ASXL transcriptional regulator 2 Neighboring gene predicted gene, 31332 Neighboring gene ribosomal protein S7, pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_030694.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK003311, AK035515, BY152001
    Related
    ENSMUST00000168012.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    3453883..3476747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)