U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Nhsl2 NHS like 2 [ Mus musculus (house mouse) ]

Gene ID: 100042480, updated on 8-Mar-2024

Summary

Official Symbol
Nhsl2provided by MGI
Official Full Name
NHS like 2provided by MGI
Primary source
MGI:MGI:3645090
See related
Ensembl:ENSMUSG00000079481 AllianceGenome:MGI:3645090
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm10456; EG621083; 6430511F03; 1110062M06Rik
Summary
Predicted to be involved in cell differentiation. Orthologous to human NHSL2 (NHS like 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in cerebellum adult (RPKM 2.1), bladder adult (RPKM 1.8) and 24 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Nhsl2 in Genome Data Viewer
Location:
X D; X 44.75 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (100892942..101135661)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (101849261..102092055)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene H3.3 histone A, pseudogene 1 Neighboring gene STARR-seq mESC enhancer starr_47663 Neighboring gene predicted gene 3858 Neighboring gene STARR-seq mESC enhancer starr_47664 Neighboring gene predicted gene, 25828 Neighboring gene STARR-seq mESC enhancer starr_47665 Neighboring gene STARR-seq mESC enhancer starr_47666 Neighboring gene retrotransposon Gag like 5 Neighboring gene STARR-positive B cell enhancer ABC_E5732 Neighboring gene high mobility group protein B1 pseudogene Neighboring gene peptidyl-prolyl cis/trans isomerase, NIMA-interacting, 4 (parvulin)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163610.2NP_001157082.1  NHS-like protein 2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL807784, AL808026
    Consensus CDS
    CCDS53156.1
    UniProtKB/Swiss-Prot
    B1AXH1, E9Q0V6
    Related
    ENSMUSP00000098893.5, ENSMUST00000101339.8
    Conserved Domains (1) summary
    pfam15273
    Location:623755
    NHS; NHS-like
  2. NM_001406043.1NP_001392972.1  NHS-like protein 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL807784, AL808026
  3. NM_001406044.1NP_001392973.1  NHS-like protein 2 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL807784, AL808026
  4. NM_001406045.1NP_001392974.1  NHS-like protein 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL807784, AL808026
  5. NM_001406046.1NP_001392975.1  NHS-like protein 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL807784, AL808026
  6. NM_001406047.1NP_001392976.1  NHS-like protein 2 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AL807784, AL808026
  7. NM_001406048.1NP_001392977.1  NHS-like protein 2 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AL807784, AL808026
  8. NM_001406049.1NP_001392978.1  NHS-like protein 2 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AL807784, AL808026
  9. NM_001406050.1NP_001392979.1  NHS-like protein 2 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AL807784, AL808026

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    100892942..101135661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011247499.3XP_011245801.1  NHS-like protein 2 isoform X2

    Conserved Domains (1) summary
    pfam15273
    Location:646801
    NHS; NHS-like
  2. XM_030251165.2XP_030107025.1  NHS-like protein 2 isoform X17

    Conserved Domains (1) summary
    pfam15273
    Location:258413
    NHS; NHS-like
  3. XM_006527718.5XP_006527781.1  NHS-like protein 2 isoform X3

    Conserved Domains (1) summary
    pfam15273
    Location:553708
    NHS; NHS-like
  4. XM_006527727.5XP_006527790.1  NHS-like protein 2 isoform X14

    Conserved Domains (1) summary
    pfam15273
    Location:371505
    NHS; NHS-like
  5. XM_006527720.5XP_006527783.1  NHS-like protein 2 isoform X5

    Conserved Domains (1) summary
    pfam15273
    Location:544699
    NHS; NHS-like
  6. XM_030251164.2XP_030107024.1  NHS-like protein 2 isoform X10

    Conserved Domains (1) summary
    pfam15273
    Location:437592
    NHS; NHS-like
  7. XM_036161746.1XP_036017639.1  NHS-like protein 2 isoform X15

  8. XM_006527721.5XP_006527784.1  NHS-like protein 2 isoform X6

    See identical proteins and their annotated locations for XP_006527784.1

    Conserved Domains (1) summary
    pfam15273
    Location:539694
    NHS; NHS-like
  9. XM_036161747.1XP_036017640.1  NHS-like protein 2 isoform X17

    Conserved Domains (1) summary
    pfam15273
    Location:258413
    NHS; NHS-like
  10. XM_030251161.2XP_030107021.1  NHS-like protein 2 isoform X1

    Conserved Domains (1) summary
    pfam15273
    Location:658813
    NHS; NHS-like
  11. XM_030251162.2XP_030107022.1  NHS-like protein 2 isoform X4

    Conserved Domains (1) summary
    pfam15273
    Location:551706
    NHS; NHS-like
  12. XM_030251163.2XP_030107023.1  NHS-like protein 2 isoform X7

    Conserved Domains (1) summary
    pfam15273
    Location:507662
    NHS; NHS-like