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Gm3696 predicted gene 3696 [ Mus musculus (house mouse) ]

Gene ID: 100042149, updated on 27-Nov-2024

Summary

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Official Symbol
Gm3696provided by MGI
Official Full Name
predicted gene 3696provided by MGI
Primary source
MGI:MGI:3781872
See related
Ensembl:ENSMUSG00000092167 AllianceGenome:MGI:3781872
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
544988; Gm5794; Gm10014
Expression
Biased expression in CNS E18 (RPKM 5.1), CNS E14 (RPKM 3.0) and 10 other tissues See more
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Genomic context

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See Gm3696 in Genome Data Viewer
Location:
14; 14 A2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (15364270..15386748)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (7074404..7106256, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31035 Neighboring gene predicted gene 3512 Neighboring gene predicted gene 6676 Neighboring gene predicted gene 3685 Neighboring gene predicted gene 10406

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Clone Names

  • MGC68059

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
alpha25-takusan
Names
alpha32-takusan
alpha5-takusan

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024712.3 → NP_001019883.2  alpha25-takusan isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a).
    Source sequence(s)
    AC141567, AC164618
    Consensus CDS
    CCDS49397.1
    UniProtKB/TrEMBL
    A0AA74KSZ2, K7N751
    Related
    ENSMUSP00000132868.2, ENSMUST00000167923.8
    Conserved Domains (1) summary
    pfam04822
    Location:50 → 125
    Takusan; Takusan

  2. NM_001368229.1 → NP_001355158.1  alpha25-takusan isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (b) is shorter at the N-terminus compared to isoform a. Variants 2 and 3 both encode the same isoform (b).
    Source sequence(s)
    AC141567, AC164618
    UniProtKB/TrEMBL
    A6NAS2, A6NAU2

  3. NM_001368230.1 → NP_001355159.1  alpha25-takusan isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (b) is shorter at the N-terminus compared to isoform a. Variants 2 and 3 both encode the same isoform (b).
    Source sequence(s)
    AC141567, AC164618
    UniProtKB/TrEMBL
    A6NAS2, A6NAU2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    15364270..15386748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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