U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

4930522L14Rik RIKEN cDNA 4930522L14 gene [ Mus musculus (house mouse) ]

Gene ID: 100041734, updated on 10-Mar-2023

Summary

Go to the top of the page Help
Official Symbol
4930522L14Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930522L14 geneprovided by MGI
Primary source
MGI:MGI:1925270
See related
Ensembl:ENSMUSG00000072762 AllianceGenome:MGI:1925270
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm42152
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See 4930522L14Rik in Genome Data Viewer
Location:
5; 5 F
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (109883381..109944438, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (109735515..109796569, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor, pseudogene 22 Neighboring gene vomeronasal 2, receptor, pseudogene 23 Neighboring gene RIKEN cDNA 5430403G16 gene Neighboring gene golgin subfamily A member 7 pseudogene Neighboring gene zinc finger protein pseudogene Neighboring gene predicted gene, 35089 Neighboring gene cDNA sequence AB010352

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC100041734; zinc finger protein 431-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378567.1 → NP_001365496.1  uncharacterized protein LOC100041734 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC162689
    UniProtKB/TrEMBL
    E9QAG4

  2. NM_001378568.1 → NP_001365497.1  uncharacterized protein LOC100041734 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC162689

  3. NM_001378570.1 → NP_001365499.1  uncharacterized protein LOC100041734 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC116718, AC162689

  4. NM_001378581.1 → NP_001365510.1  uncharacterized protein LOC100041734 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC162689, AK019690
    UniProtKB/TrEMBL
    Q8C1G8

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    109883381..109944438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011249625.3 → XP_011247927.1  zinc finger protein 431-like isoform X5

    Conserved Domains (3) summary
    COG5048
    Location:122 → 533
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:408 → 428
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:533 → 558
    zf-H2C2_2; Zinc-finger double domain

  2. XM_030255015.2 → XP_030110875.1  zinc finger protein 431-like isoform X2

    Conserved Domains (3) summary
    COG5048
    Location:194 → 605
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:480 → 500
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:605 → 630
    zf-H2C2_2; Zinc-finger double domain

  3. XM_011249622.3 → XP_011247924.1  zinc finger protein 431-like isoform X1

    UniProtKB/TrEMBL
    E9QAG4
    Related
    ENSMUSP00000108166.2, ENSMUST00000112547.8
    Conserved Domains (4) summary
    COG5048
    Location:213 → 624
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:499 → 519
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 44
    KRAB; KRAB box
    pfam13465
    Location:624 → 649
    zf-H2C2_2; Zinc-finger double domain

  4. XM_036165684.1 → XP_036021577.1  zinc finger protein 431-like isoform X3

    Conserved Domains (3) summary
    COG5048
    Location:182 → 593
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:468 → 488
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:593 → 618
    zf-H2C2_2; Zinc-finger double domain

  5. XM_011249623.3 → XP_011247925.1  zinc finger protein 431-like isoform X4

    Conserved Domains (3) summary
    COG5048
    Location:182 → 593
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:468 → 488
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:593 → 618
    zf-H2C2_2; Zinc-finger double domain

  6. XM_036165685.1 → XP_036021578.1  zinc finger protein 431-like isoform X6

    Conserved Domains (3) summary
    COG5048
    Location:101 → 450
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:273 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 44
    KRAB; KRAB box

  7. XM_036165686.1 → XP_036021579.1  zinc finger protein 431-like isoform X7

    Conserved Domains (2) summary
    COG5048
    Location:10 → 359
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:182 → 202
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases