U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Lncenc1 long non-coding RNA, embryonic stem cells expressed 1 [ Mus musculus (house mouse) ]

Gene ID: 100039691, updated on 29-Nov-2022

Summary

Official Symbol
Lncenc1provided by MGI
Official Full Name
long non-coding RNA, embryonic stem cells expressed 1provided by MGI
Primary source
MGI:MGI:3780541
See related
Ensembl:ENSMUSG00000078952 AllianceGenome:MGI:3780541
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm2373; Gm11019; Platr18; Lincenc1; linc-Enc1
Summary
Acts upstream of or within regulation of gene expression. Is expressed in brain. Orthologous to human LINC01157 (long intergenic non-protein coding RNA 1157). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Lncenc1 in Genome Data Viewer
Location:
13 D1; 13
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (97571478..97634172)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (97434970..97497664)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33390 Neighboring gene predicted gene, 33447 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene, 41030 Neighboring gene predicted gene, 41029

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Other Names

  • long intergenic non-coding RNA, embryonic stem cells expressed 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110430.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC124581, BY736053
    Related
    ENSMUST00000179324.2
  2. NR_110431.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC124581
  3. NR_110432.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two exons and contains an alternate 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC124581, BC065997
    Related
    ENSMUST00000109431.10

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    97571478..97634172
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)