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dipk1a divergent protein kinase domain 1A [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100038264, updated on 8-Mar-2024

Summary

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Official Symbol
dipk1aprovided by Xenbase
Official Full Name
divergent protein kinase domain 1Aprovided by Xenbase
Primary source
Xenbase:XB-GENE-951303
See related
Ensembl:ENSXETG00000023002
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
fam69a
Orthologs
human mouse all
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Genomic context

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See dipk1a in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (104250872..104289929)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (94076483..94113938)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene transmembrane p24 trafficking protein 5 Neighboring gene metal response element binding transcription factor 2 Neighboring gene provisional ortholog of leucine rich repeat containing 8 VRAC subunit C Neighboring gene ribosomal protein L5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
divergent protein kinase domain 1A
Names
family with sequence similarity 69 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097382.1 → NP_001090851.1  divergent protein kinase domain 1A

    See identical proteins and their annotated locations for NP_001090851.1

    Status: PROVISIONAL

    Source sequence(s)
    BC135136
    UniProtKB/TrEMBL
    A0A803KIU2, A4IGK1
    Conserved Domains (2) summary
    pfam12260
    Location:177 → 366
    PIP49_C; Protein-kinase domain of FAM69
    pfam14875
    Location:3 → 158
    PIP49_N; N-term cysteine-rich ER, FAM69

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    104250872..104289929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012960387.3 → XP_012815841.1  divergent protein kinase domain 1A isoform X1

    UniProtKB/TrEMBL
    A0A803J8H4, A0A803KIU2
    Related
    ENSXETP00000104171.1, ENSXETT00000116817.1
    Conserved Domains (2) summary
    pfam12260
    Location:188 → 390
    PIP49_C; Protein-kinase domain of FAM69
    pfam14875
    Location:14 → 169
    PIP49_N; N-term cysteine-rich ER, FAM69

  2. XM_012960388.3 → XP_012815842.1  divergent protein kinase domain 1A isoform X2

    UniProtKB/TrEMBL
    A0A5G3L798, A0A803KIU2, F7DSB4
    Related
    ENSXETP00000049750.3, ENSXETT00000049750.5
    Conserved Domains (2) summary
    pfam12260
    Location:177 → 379
    PIP49_C; Protein-kinase domain of FAM69
    pfam14875
    Location:3 → 158
    PIP49_N; N-term cysteine-rich ER, FAM69
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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