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clock clock circadian regulator [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100038163, updated on 15-Nov-2019

Summary

Official Symbol
clockprovided by Xenbase
Official Full Name
clock circadian regulatorprovided by Xenbase
Primary source
Xenbase:XB-GENE-495448
See related
Ensembl:ENSXETG00000008008
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
clk; Xclk; XClock
Orthologs

Genomic context

See clock in Genome Data Viewer
Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (31203829..31249239, complement)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668232.1 (183413060..183458375)

Chromosome 1 - NC_030677.1Genomic Context describing neighboring genes Neighboring gene steroid 5 alpha-reductase 3 Neighboring gene transmembrane protein 165 Neighboring gene neuromedin U Neighboring gene uncharacterized LOC100487667 Neighboring gene exocyst complex component 1 like

Genomic regions, transcripts, and products

Pathways from BioSystems

  • Herpes simplex infection, organism-specific biosystem (from KEGG)
    Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Herpes simplex infection, conserved biosystem (from KEGG)
    Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

General gene information

Homology

General protein information

Preferred Names
circadian locomoter output cycles protein kaput
Names
clock homolog
NP_001122127.1
XP_017947152.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128655.1NP_001122127.1  circadian locomoter output cycles protein kaput

    See identical proteins and their annotated locations for NP_001122127.1

    Status: PROVISIONAL

    Source sequence(s)
    BC167652
    UniProtKB/TrEMBL
    B3DM05
    Related
    ENSXETP00000028584.1, ENSXETT00000018142.1
    Conserved Domains (4) summary
    cd00083
    Location:2377
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:266364
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam13426
    Location:110211
    PAS_9; PAS domain
    pfam14598
    Location:265368
    PAS_11; PAS domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030677.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    31203829..31249239 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018091663.1XP_017947152.1  circadian locomoter output cycles protein kaput isoform X1

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