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PDZK1P1 PDZ domain containing 1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100034743, updated on 5-Jan-2022

Summary

Official Symbol
PDZK1P1provided by HGNC
Official Full Name
PDZ domain containing 1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:31974
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PDZK1P2
Summary
Predicted to enable protein-membrane adaptor activity. Predicted to be involved in protein localization to plasma membrane. Predicted to be active in apical plasma membrane. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Biased expression in kidney (RPKM 151.5), small intestine (RPKM 34.8) and 2 other tissues See more
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Genomic context

See PDZK1P1 in Genome Data Viewer
Location:
1q21.2
Exon count:
10
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (147993862..148014956, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (147466094..147487188, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371229 Neighboring gene gap junction protein alpha 8 Neighboring gene G protein-coupled receptor 89B Neighboring gene tRNA-Arg (anticodon CCT) 6-2 Neighboring gene long intergenic non-protein coding RNA 2804 Neighboring gene RNA, U1 small nuclear 129, pseudogene Neighboring gene tRNA-Gln (anticodon CTG) 3-2 Neighboring gene RNA, variant U1 small nuclear 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • PDZ domain containing 1 pseudogene 2

Clone Names

  • FLJ44765

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein-membrane adaptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in protein localization to plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in apical plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_111936.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK126719, DA085292

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    147993862..148014956 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_005958.6: Suppressed sequence

    Description
    NG_005958.6: This RefSeq was permanently suppressed because it is now thought that this gene is transcribed.
  2. NR_003377.2: Suppressed sequence

    Description
    NR_003377.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
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