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si:dkey-253d23.2 si:dkey-253d23.2 [ Danio rerio (zebrafish) ]

Gene ID: 100034432, updated on 27-Mar-2024

Summary

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Official Symbol
si:dkey-253d23.2provided by ZNC
Official Full Name
si:dkey-253d23.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-050208-410
See related
Ensembl:ENSDARG00000071589 AllianceGenome:ZFIN:ZDB-GENE-050208-410
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:dkey-253d23.2 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (9831796..9882244, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (9801756..9852555, complement)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene si:ch211-236g6.1 Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like Neighboring gene si:dkey-253d23.3 Neighboring gene wu:fi42h12 Neighboring gene zinc finger protein 990

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
oocyte zinc finger protein XlCOF6; uncharacterized protein LOC100034432

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    9831796..9882244 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009296126.3 → XP_009294401.1  oocyte zinc finger protein XlCOF6

    See identical proteins and their annotated locations for XP_009294401.1

    UniProtKB/TrEMBL
    A0A8M3AUL2, X1WDI0
    Related
    ENSDARP00000128279.2, ENSDART00000155908.3
    Conserved Domains (3) summary
    COG5048
    Location:6 → 475
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:535 → 620
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:407 → 427
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_021469457.1 → XP_021325132.1  oocyte zinc finger protein XlCOF6

    UniProtKB/TrEMBL
    A0A8M3AUL2, X1WDI0
    Conserved Domains (3) summary
    COG5048
    Location:6 → 475
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:535 → 620
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:407 → 427
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_003201012.5 → XP_003201060.1  oocyte zinc finger protein XlCOF6

    See identical proteins and their annotated locations for XP_003201060.1

    UniProtKB/TrEMBL
    A0A8M3AUL2, X1WDI0
    Related
    ENSDARP00000154207.1, ENSDART00000193573.1
    Conserved Domains (3) summary
    COG5048
    Location:6 → 475
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:535 → 620
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:407 → 427
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_005173992.4 → XP_005174049.1  oocyte zinc finger protein XlCOF6

    See identical proteins and their annotated locations for XP_005174049.1

    UniProtKB/TrEMBL
    A0A8M3AUL2, X1WDI0
    Related
    ENSDARP00000154132.1, ENSDART00000193197.1
    Conserved Domains (3) summary
    COG5048
    Location:6 → 475
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:535 → 620
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:407 → 427
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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