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RFC5 replication factor C subunit 5 [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100023612, updated on 8-May-2024
Gene symbol
RFC5
Gene description
replication factor C subunit 5
See related
EnsemblRapid:ENSMODG00000015360
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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See RFC5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 3 NC_077229.1 (33537974..33550685, complement)
103 previous assembly MonDom5 (GCF_000002295.2) 3 NC_008803.1 (506384057..506396783)

Chromosome 3 - NC_077229.1Genomic Context describing neighboring genes Neighboring gene V-set and immunoglobulin domain containing 10 Neighboring gene WD repeat and SOCS box containing 2 Neighboring gene kinase suppressor of Ras 2-like Neighboring gene microRNA mir-7290

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA clamp loader activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA replication factor C complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
replication factor C subunit 5
Names
replication factor C (activator 1) 5, 36.5kDa

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077229.1 Reference mMonDom1.pri

    Range
    33537974..33550685 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001375066.4 → XP_001375103.1  replication factor C subunit 5 isoform X3

    UniProtKB/TrEMBL
    F6WXH7
    Related
    ENSMODP00000075638.1, ENSMODT00000125384.1
    Conserved Domains (4) summary
    cd00009
    Location:37 → 178
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    PRK00440
    Location:20 → 331
    rfc; replication factor C small subunit; Reviewed
    pfam08542
    Location:260 → 329
    Rep_fac_C; Replication factor C C-terminal domain
    pfam16193
    Location:194 → 222
    AAA_assoc_2; AAA C-terminal domain

  2. XM_016432489.2 → XP_016287975.1  replication factor C subunit 5 isoform X2

    UniProtKB/TrEMBL
    F6WXH7
    Related
    ENSMODP00000019178.5, ENSMODT00000019524.5

  3. XM_056821663.1 → XP_056677641.1  replication factor C subunit 5 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials