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Riean_1579 D-alanine--D-alanine ligase [ Riemerella anatipestifer ATCC 11845 = DSM 15868 ]

Gene ID: 10002357, discontinued on 4-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:
Gene symbol
Riean_1579
Gene description
D-alanine--D-alanine ligase
Locus tag
Riean_1579
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Riemerella anatipestifer ATCC 11845 = DSM 15868 (strain: DSM 15868, nat-host: Anas platyrhynchos, old-name: Riemerella anatipestifer DSM 15868)
Lineage
Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Riemerella

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • D-Alanine metabolism, organism-specific biosystem (from KEGG)
    D-Alanine metabolism, organism-specific biosystem
    D-Alanine metabolism
  • D-Alanine metabolism, conserved biosystem (from KEGG)
    D-Alanine metabolism, conserved biosystem
    D-Alanine metabolism
  • Peptidoglycan biosynthesis, organism-specific biosystem (from KEGG)
    Peptidoglycan biosynthesis, organism-specific biosystemPeptidoglycan is a macromolecule made of long aminosugar strands cross-linked by short peptides. It forms the cell wall in bacteria surrounding the cytoplasmic membrane. The glycan strands are typica...
  • Peptidoglycan biosynthesis, conserved biosystem (from KEGG)
    Peptidoglycan biosynthesis, conserved biosystemPeptidoglycan is a macromolecule made of long aminosugar strands cross-linked by short peptides. It forms the cell wall in bacteria surrounding the cytoplasmic membrane. The glycan strands are typica...
  • Vancomycin resistance, organism-specific biosystem (from KEGG)
    Vancomycin resistance, organism-specific biosystemVancomycin (VCM) is a glycopeptide antibiotic agent that inhibits the synthesis of peptidolgycan in the production of bacterial cell walls. It is active in most Gram-positive bacteria and acts by bin...
  • Vancomycin resistance, conserved biosystem (from KEGG)
    Vancomycin resistance, conserved biosystemVancomycin (VCM) is a glycopeptide antibiotic agent that inhibits the synthesis of peptidolgycan in the production of bacterial cell walls. It is active in most Gram-positive bacteria and acts by bin...
Names
D-alanine--D-alanine ligase
YP_004046242.1
  • COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein
    InterPro IPR000291: IPR011127: IPR011095: IPR011761: IPR 005905
    KEGG: fba:FIC_02185 D-alanyl-alanine synthetase A
    PFAM: D-alanine--D-alanine ligase domain protein
    PRIAM: D-alanine--D-alanine ligase
    SPTR: D-alanine--D-alanine ligase;
    manually curated
    PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus
    TIGRFAM: D-alanine--D-alanine ligase

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014738.1 Reference assembly

    Range
    1737274..1738257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_004046242.1 D-alanine--D-alanine ligase [Riemerella anatipestifer ATCC 11845 = DSM 15868]

    Status: PROVISIONAL

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