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APOD apolipoprotein D [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100018970, updated on 8-May-2024

Summary

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Gene symbol
APOD
Gene description
apolipoprotein D
See related
EnsemblRapid:ENSMODG00000052732
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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Genomic context

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See APOD in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 8 NC_077234.1 (3085983..3102652)
103 previous assembly MonDom5 (GCF_000002295.2) Unplaced Scaffold NW_001583292.1 (2145..8265)

Chromosome 8 - NC_077234.1Genomic Context describing neighboring genes Neighboring gene discs large MAGUK scaffold protein 1 Neighboring gene collagen alpha-1(VII) chain-like Neighboring gene very long-chain specific acyl-CoA dehydrogenase, mitochondrial-like Neighboring gene 3-hydroxybutyrate dehydrogenase 1 Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 2 Neighboring gene uncharacterized LOC103099510 Neighboring gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cholesterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tissue regeneration IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apolipoprotein D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077234.1 Reference mMonDom1.pri

    Range
    3085983..3102652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056807114.1 → XP_056663092.1  apolipoprotein D

    UniProtKB/TrEMBL
    A0A5F8H2G9
    Related
    ENSMODP00000065046.1, ENSMODT00000099329.1

  2. XM_056807113.1 → XP_056663091.1  apolipoprotein D

    UniProtKB/TrEMBL
    A0A5F8H2G9
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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