Format

Send to:

Choose Destination

atg9a ATG9 autophagy related 9 homolog A (S. cerevisiae) [ Danio rerio (zebrafish) ]

Gene ID: 100009663, updated on 1-Aug-2018

Summary

Official Symbol
atg9aprovided by ZNC
Official Full Name
ATG9 autophagy related 9 homolog A (S. cerevisiae)provided by ZNC
Primary source
ZFIN:ZDB-GENE-070209-65
See related
Ensembl:ENSDARG00000044551 Vega:OTTDARG00000027274
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:158700
Orthologs

Genomic context

See atg9a in Genome Data Viewer
Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (11249980..11266620)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (11014588..11030936)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene PTTG1 interacting protein a Neighboring gene myosin X-like 1 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene pericentrin

Genomic regions, transcripts, and products

Pathways from BioSystems

  • Autophagy - animal, organism-specific biosystem (from KEGG)
    Autophagy - animal, organism-specific biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
  • Autophagy - animal, conserved biosystem (from KEGG)
    Autophagy - animal, conserved biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
  • Autophagy - other, organism-specific biosystem (from KEGG)
    Autophagy - other, organism-specific biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
  • Autophagy - other, conserved biosystem (from KEGG)
    Autophagy - other, conserved biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
  • Cellular responses to stress, organism-specific biosystem (from REACTOME)
    Cellular responses to stress, organism-specific biosystemcomputationally inferred pathway (not manually curated)
  • Macroautophagy, organism-specific biosystem (from REACTOME)
    Macroautophagy, organism-specific biosystemcomputationally inferred pathway (not manually curated)
  • Mitophagy - animal, organism-specific biosystem (from KEGG)
    Mitophagy - animal, organism-specific biosystemMitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process calle...
  • Mitophagy - animal, conserved biosystem (from KEGG)
    Mitophagy - animal, conserved biosystemMitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process calle...

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
autophagosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
autophagy IEA
Inferred from Electronic Annotation
more info
 
autophagy of mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
late nucleophagy IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein localization to phagophore assembly site IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
autophagosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
phagophore assembly site IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
autophagy-related protein 9A

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001083031.1NP_001076500.1  autophagy-related protein 9A

    See identical proteins and their annotated locations for NP_001076500.1

    Status: PROVISIONAL

    Source sequence(s)
    BC133145
    UniProtKB/TrEMBL
    A2RV24
    Related
    ENSDARP00000065410.5, OTTDARP00000029360, ENSDART00000065411.7, OTTDART00000036600
    Conserved Domains (1) summary
    pfam04109
    Location:170524
    APG9; Autophagy protein Apg9

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    11249980..11266620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009302184.3XP_009300459.1  autophagy-related protein 9A isoform X1

    See identical proteins and their annotated locations for XP_009300459.1

    UniProtKB/TrEMBL
    F1QCA8
    Related
    ENSDARP00000148935.1, ENSDART00000186547.1
    Conserved Domains (1) summary
    pfam04109
    Location:170524
    APG9; Autophagy protein Apg9
  2. XM_005165759.4XP_005165816.1  autophagy-related protein 9A isoform X1

    See identical proteins and their annotated locations for XP_005165816.1

    UniProtKB/TrEMBL
    F1QCA8
    Conserved Domains (1) summary
    pfam04109
    Location:170524
    APG9; Autophagy protein Apg9
Support Center