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SCN9A sodium voltage-gated channel alpha subunit 9 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100009210, updated on 27-Jan-2018

Summary

Gene symbol
SCN9A
Gene description
sodium voltage-gated channel alpha subunit 9
See related
Ensembl:ENSOCUG00000005623
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs

Genomic context

See SCN9A in Genome Data Viewer
Location:
chromosome: 7
Exon count:
27
Annotation release Status Assembly Chr Location
102 current OryCun2.0 (GCF_000003625.3) 7 NC_013675.1 (105662643..105768141, complement)

Chromosome 7 - NC_013675.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 21B Neighboring gene sodium channel protein type 1 subunit alpha Neighboring gene 52 kDa repressor of the inhibitor of the protein kinase-like Neighboring gene sodium voltage-gated channel alpha subunit 7

Genomic regions, transcripts, and products

Genomic Sequence:
NC_013675.1 Chromosome 7 Reference OryCun2.0 Primary Assembly

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Taste transduction, organism-specific biosystem (from KEGG)
    Taste transduction, organism-specific biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...
  • Taste transduction, conserved biosystem (from KEGG)
    Taste transduction, conserved biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...

General protein information

Preferred Names
sodium channel protein type 9 subunit alpha
Names
nas
schwann cell sodium channel
sodium channel alpha-subunit
sodium channel protein type IX subunit alpha
sodium channel, voltage-gated, type IX, alpha subunit
voltage-gated sodium channel subunit alpha Nav1.7

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082358.1NP_001075827.1  sodium channel protein type 9 subunit alpha

    See identical proteins and their annotated locations for NP_001075827.1

    Status: PROVISIONAL

    Source sequence(s)
    U35238
    UniProtKB/Swiss-Prot
    Q28644
    Conserved Domains (5) summary
    cd13433
    Location:14551507
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12231463
    Ion_trans; Ion transport protein
    pfam06512
    Location:9791184
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:486612
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17791834
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

RefSeqs of Annotated Genomes: Oryctolagus cuniculus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OryCun2.0 Primary Assembly

Genomic

  1. NC_013675.1 Reference OryCun2.0 Primary Assembly

    Range
    105662643..105768141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017342619.1XP_017198108.1  sodium channel protein type 9 subunit alpha isoform X3

  2. XM_017342620.1XP_017198109.1  sodium channel protein type 9 subunit alpha isoform X4

    Conserved Domains (5) summary
    cd13433
    Location:14551507
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12231463
    Ion_trans; Ion transport protein
    pfam06512
    Location:9791184
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:486612
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17791834
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  3. XM_017342618.1XP_017198107.1  sodium channel protein type 9 subunit alpha isoform X2

    Related
    ENSOCUP00000020201.1, ENSOCUT00000030215.2
  4. XM_017342617.1XP_017198106.1  sodium channel protein type 9 subunit alpha isoform X1

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