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COL3A1 collagen type III alpha 1 chain [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100009177, updated on 2-Dec-2024

Summary

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Gene symbol
COL3A1
Gene description
collagen type III alpha 1 chain
See related
Ensembl:ENSOCUG00000014988
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See COL3A1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
51
Annotation release Status Assembly Chr Location
RS_2024_11 current mOryCun1.1 (GCF_964237555.1) 3 NC_091434.1 (51381884..51423804, complement)
RS_2023_02 previous assembly UM_NZW_1.0 (GCF_009806435.1) 7 NC_067380.1 (44255283..44298222, complement)

Chromosome 3 - NC_091434.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138848959 Neighboring gene collagen type V alpha 2 chain Neighboring gene uncharacterized LOC127491587 Neighboring gene uncharacterized LOC138848960 Neighboring gene NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like Neighboring gene RRP15-like protein pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for insufficient chondrocytic differentiation during repair of full-thickness defects of articular cartilage. Metsäranta M, et al. Matrix Biol, 1996 Apr. PMID 8783186
  2. Biomarker expression in lung of rabbit with pulmonary fibrosis induced by ammonium perchlorate. Wu FH, et al. Toxicol Ind Health, 2011 Apr. PMID 20937628
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Ammonium perchlorate can increase gene expressions of types I, III collagens, TGF-beta(1) and TNF-alpha in lung of rabbits.
    Title: Biomarker expression in lung of rabbit with pulmonary fibrosis induced by ammonium perchlorate.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent conferring tensile strength IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(III) chain
Names
collagen, type III, alpha 1
pro alpha 1 type III collagen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_964237555.1-RS_2024_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOryCun1.1

Genomic

  1. NC_091434.1 Reference mOryCun1.1

    Range
    51381884..51423804 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002712333.5 → XP_002712379.1  collagen alpha-1(III) chain

    UniProtKB/TrEMBL
    G1T8J0
    Related
    ENSOCUP00000012893.3
    Conserved Domains (3) summary
    pfam01391
    Location:232 → 291
    Collagen; Collagen triple helix repeat (20 copies)
    smart00214
    Location:31 → 87
    VWC; von Willebrand factor (vWF) type C domain
    pfam01410
    Location:1229 → 1461
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials