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VIM vimentin [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100008924, updated on 2-Dec-2024
Gene symbol
VIM
Gene description
vimentin
See related
Ensembl:ENSOCUG00000009222
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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See VIM in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_11 current mOryCun1.1 (GCF_964237555.1) 13 NC_091444.1 (43366833..43379433)
RS_2023_02 previous assembly UM_NZW_1.0 (GCF_009806435.1) 16 NC_067389.1 (41354501..41362557)

Chromosome 13 - NC_091444.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127483443 Neighboring gene tRNA aspartic acid methyltransferase 1 Neighboring gene uncharacterized LOC138844961 Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 Neighboring gene 3-hydroxyacyl-CoA dehydratase 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Vimentin as a Cap of Invisibility: Proposed Role of Vimentin in Rabbit Hemorrhagic Disease Virus (RHDV) Infection. Blatkiewicz M, et al. Viruses, 2021 Jul 20. PMID 34372621, Free PMC Article
  2. Vimentin as a Marker of Early Differentiating, Highly Motile Corneal Epithelial Cells. Castro-Muñozledo F, et al. J Cell Physiol, 2017 Apr. PMID 27404216
  3. Vimentin Phosphorylation Underlies Myofibroblast Sensitivity to Withaferin A In Vitro and during Corneal Fibrosis. Bargagna-Mohan P, et al. PLoS One, 2015. PMID 26186445, Free PMC Article
  4. Identification of differentially expressed proteins in atherosclerotic aorta and effect of vitamin E. Kaga E, et al. J Proteomics, 2013 Oct 30. PMID 23796494
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Vimentin as a Cap of Invisibility: Proposed Role of Vimentin in Rabbit Hemorrhagic Disease Virus (RHDV) Infection.
    Title: Vimentin as a Cap of Invisibility: Proposed Role of Vimentin in Rabbit Hemorrhagic Disease Virus (RHDV) Infection.
  2. Vim expression in corneal epithelium is found in a cell population composed of highly motile cells.
    Title: Vimentin as a Marker of Early Differentiating, Highly Motile Corneal Epithelial Cells.
  3. these findings identify a hereto-unappreciated role for serine-38 phosphorylated vimentin as an important determinant of myofibroblast sensitivity to Withaferin A.
    Title: Vimentin Phosphorylation Underlies Myofibroblast Sensitivity to Withaferin A In Vitro and during Corneal Fibrosis.
  4. These differentially expressed proteins associated with key mechanisms involved in atherosclerosis and signaling mechanisms related with vitamin E.
    Title: Identification of differentially expressed proteins in atherosclerotic aorta and effect of vitamin E.
Submit: New GeneRIF Correction

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
vimentin

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RefSeqs of Annotated Genomes: GCF_964237555.1-RS_2024_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOryCun1.1

Genomic

  1. NC_091444.1 Reference mOryCun1.1

    Range
    43366833..43379433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002717420.5 → XP_002717466.1  vimentin

    UniProtKB/TrEMBL
    A0A5F9DS35, G1SWS9
    Related
    ENSOCUP00000007960.2
    Conserved Domains (3) summary
    pfam00038
    Location:102 → 410
    Filament; Intermediate filament protein
    pfam04732
    Location:14 → 101
    Filament_head; Intermediate filament head (DNA binding) region
    pfam15112
    Location:153 → 257
    DUF4559; Domain of unknown function (DUF4559)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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