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aftphb aftiphilin b [ Danio rerio (zebrafish) ]

Gene ID: 100004990, updated on 12-Aug-2018

Summary

Official Symbol
aftphbprovided by ZNC
Official Full Name
aftiphilin bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-388
See related
Ensembl:ENSDARG00000071347 Vega:OTTDARG00000024814
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
si:dkey-148f10.6; si:ch211-154e15.9

Genomic context

See aftphb in Genome Data Viewer
Location:
chromosome: 17
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (24569862..24587737, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (24551578..24569327, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene pellino E3 ubiquitin protein ligase 1b Neighboring gene ATP-binding cassette, sub-family H, member 1 Neighboring gene rearranged L-myc fusion Neighboring gene zinc metallopeptidase, STE24 homolog

Genomic regions, transcripts, and products

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
clathrin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cilium movement IMP
Inferred from Mutant Phenotype
more info
PubMed 
intracellular transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    24569862..24587737 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467413.1XP_021323088.1  aftiphilin isoform X1

    Related
    ENSDARP00000120759.1, ENSDART00000143084.3
    Conserved Domains (1) summary
    pfam15045
    Location:518585
    Clathrin_bdg; Clathrin-binding box of Aftiphilin, vesicle trafficking
  2. XM_021467414.1XP_021323089.1  aftiphilin isoform X2

    Conserved Domains (1) summary
    pfam15045
    Location:518585
    Clathrin_bdg; Clathrin-binding box of Aftiphilin, vesicle trafficking

RNA

  1. XR_002455951.1 RNA Sequence

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394990.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    125974..148453 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009293061.3XP_009291336.2  aftiphilin isoform X1

    Conserved Domains (1) summary
    pfam15045
    Location:518585
    Clathrin_bdg; Clathrin-binding box of Aftiphilin, vesicle trafficking
  2. XM_001344117.7XP_001344153.4  aftiphilin isoform X2

    Conserved Domains (1) summary
    pfam15045
    Location:518585
    Clathrin_bdg; Clathrin-binding box of Aftiphilin, vesicle trafficking
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