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rnf25 ring finger protein 25 [ Danio rerio (zebrafish) ]

Gene ID: 100003846, updated on 13-Jun-2020

Summary

Official Symbol
rnf25provided by ZNC
Official Full Name
ring finger protein 25provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1581
See related
Ensembl:ENSDARG00000027182
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:66260
Orthologs

Genomic context

See rnf25 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (32671146..32680126)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (32539432..32548412)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (32808122..32817102)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene THO complex 6 Neighboring gene si:dkey-16l2.16 Neighboring gene K(lysine) acetyltransferase 8 Neighboring gene si:dkey-16l2.17

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Clone Names

  • MGC66260

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
positive regulation of NF-kappaB transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of canonical Wnt signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
E3 ubiquitin-protein ligase RNF25
NP_957477.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201183.1NP_957477.1  E3 ubiquitin-protein ligase RNF25

    See identical proteins and their annotated locations for NP_957477.1

    Status: PROVISIONAL

    Source sequence(s)
    BC055571
    UniProtKB/TrEMBL
    Q7SXJ6
    Related
    ENSDARP00000038815.4, ENSDART00000039466.5
    Conserved Domains (2) summary
    pfam05773
    Location:10114
    RWD; RWD domain
    pfam13639
    Location:122191
    zf-RING_2; Ring finger domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    32671146..32680126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394535.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    158886..168436
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395227.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    33072..42052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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