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stmn2b stathmin 2b [ Danio rerio (zebrafish) ]

Gene ID: 100003563, updated on 3-Oct-2019

Summary

Official Symbol
stmn2bprovided by ZNC
Official Full Name
stathmin 2bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-207
See related
Ensembl:ENSDARG00000070537
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
scg10; stmn2; scgn10; zgc:110132

Genomic context

See stmn2b in Genome Data Viewer
Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (31771252..31790551)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (32183936..32203238)
103 previous assembly Zv9 (GCF_000002035.4) 19 NC_007130.5 (33016643..33035949)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene RHO family interacting cell polarization regulator 2 Neighboring gene si:dkeyp-120h9.1 Neighboring gene hes-related family bHLH transcription factor with YRPW motif 1 Neighboring gene uncharacterized LOC103909257

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC110132

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
tubulin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
microtubule depolymerization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nervous system development IGI
Inferred from Genetic Interaction
more info
PubMed 
neuron projection development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of microtubule polymerization or depolymerization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of microtubule polymerization or depolymerization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
growth cone IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
neuron projection IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
stathmin-2
Names
SCG10a
stathmin-like 2
stathmin-like 2b
superiorcervical ganglia, neural specific 10

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024222.1NP_001019393.1  stathmin-2

    See identical proteins and their annotated locations for NP_001019393.1

    Status: PROVISIONAL

    Source sequence(s)
    BC095180
    UniProtKB/TrEMBL
    Q4VBT7
    Conserved Domains (1) summary
    pfam00836
    Location:43174
    Stathmin; Stathmin family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    31771252..31790551
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005159590.4XP_005159647.1  stathmin-2 isoform X1

    See identical proteins and their annotated locations for XP_005159647.1

    UniProtKB/TrEMBL
    Q4VBT7
    Related
    ENSDARP00000112978.1, ENSDART00000147474.3
    Conserved Domains (1) summary
    pfam00836
    Location:43174
    Stathmin; Stathmin family
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