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trim35-33 tripartite motif containing 35-33 [ Danio rerio (zebrafish) ]

Gene ID: 100002502, updated on 1-Aug-2018

Summary

Official Symbol
trim35-33provided by ZNC
Official Full Name
tripartite motif containing 35-33provided by ZNC
Primary source
ZFIN:ZDB-GENE-081031-1
See related
Ensembl:ENSDARG00000060838 Vega:OTTDARG00000029257
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
si:ch1073-352h10.2

Genomic context

See trim35-33 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (36704952..36714245)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (36735864..36744892)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene nucleolin Neighboring gene tripartite motif containing 35-34 Neighboring gene tripartite motif-containing protein 35-like Neighboring gene si:ch1073-324l1.1

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
intracellular IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
tripartite motif-containing protein 35

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    36704952..36714245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001342239.5XP_001342275.1  tripartite motif-containing protein 35

    UniProtKB/TrEMBL
    F1R7D2
    Related
    ENSDARP00000119250.2, OTTDARP00000032056, ENSDART00000146662.3
    Conserved Domains (5) summary
    smart00336
    Location:88124
    BBOX; B-Box-type zinc finger
    cd00162
    Location:1152
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam10187
    Location:124213
    Nefa_Nip30_N; N-terminal domain of NEFA-interacting nuclear protein NIP30
    pfam13863
    Location:130243
    DUF4200; Domain of unknown function (DUF4200)
    cl02614
    Location:290420
    SPRY; SPRY domain
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