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tacr2 tachykinin receptor 2 [ Danio rerio (zebrafish) ]

Gene ID: 100002125, updated on 13-Jun-2020

Summary

Official Symbol
tacr2provided by ZNC
Official Full Name
tachykinin receptor 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-090312-188
See related
Ensembl:ENSDARG00000074509
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-1n9.11
Orthologs

Genomic context

See tacr2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (22964474..22971637)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (22834024..22841187)
103 previous assembly Zv9 (GCF_000002035.4) 13 NC_007124.5 (23104893..23111604)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene RUN and FYVE domain containing 2 Neighboring gene tetraspanin 15 Neighboring gene hexokinase 1 Neighboring gene hexokinase domain containing 1

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
substance K receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
tachykinin receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
tachykinin receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
positive regulation of flagellated sperm motility IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
sperm midpiece IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001327859.1NP_001314788.1  substance-K receptor

    Status: VALIDATED

    Source sequence(s)
    BX530068
    UniProtKB/TrEMBL
    F1QPL8
    Related
    ENSDARP00000117211.2, ENSDART00000142129.3
    Conserved Domains (2) summary
    pfam00001
    Location:51307
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:41166
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    22964474..22971637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394884.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    424176..431339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395309.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    148567..155730
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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