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si:ch211-250n8.1 si:ch211-250n8.1 [ Danio rerio (zebrafish) ]

Gene ID: 100001306, updated on 13-Jun-2020

Summary

Official Symbol
si:ch211-250n8.1provided by ZNC
Official Full Name
si:ch211-250n8.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-130603-2
See related
Ensembl:ENSDARG00000088736
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs

Genomic context

See si:ch211-250n8.1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (36413719..36427595)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (35740893..35754854)
103 previous assembly Zv9 (GCF_000002035.4) 12 NC_007123.5 (37234424..37245496, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene potassium inwardly rectifying channel subfamily J member 16 Neighboring gene galanin receptor type 2-like Neighboring gene unk zinc finger Neighboring gene unc-13 homolog D (C. elegans)

Genomic regions, transcripts, and products

Pathways from PubChem

General protein information

Preferred Names
uncharacterized protein si:ch211-250n8.1
Names
zmp:0000000939

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    36413719..36427595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021480398.1XP_021336073.1  uncharacterized protein si:ch211-250n8.1 isoform X2

    Conserved Domains (3) summary
    cd00136
    Location:148217
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
    cd13168
    Location:274400
    PTB_LOC417372; uncharacterized protein LOC417372 Phosphotyrosine-binding (PTB) PH-like fold
    cl02689
    Location:21124
    RUN; RUN domain
  2. XM_021480397.1XP_021336072.1  uncharacterized protein si:ch211-250n8.1 isoform X1

    Related
    ENSDARP00000108809.1, ENSDART00000126325.3
    Conserved Domains (3) summary
    cd00136
    Location:183252
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
    cd13168
    Location:309435
    PTB_LOC417372; uncharacterized protein LOC417372 Phosphotyrosine-binding (PTB) PH-like fold
    cl02689
    Location:35159
    RUN; RUN domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394857.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    161161..175037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472582.1XP_021328257.1  uncharacterized protein si:ch211-250n8.1 isoform X2

    Conserved Domains (3) summary
    cd00136
    Location:148217
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
    cd13168
    Location:274400
    PTB_LOC417372; uncharacterized protein LOC417372 Phosphotyrosine-binding (PTB) PH-like fold
    cl02689
    Location:21124
    RUN; RUN domain
  2. XM_001341292.8XP_001341328.6  uncharacterized protein si:ch211-250n8.1 isoform X1

    UniProtKB/TrEMBL
    E7FGG0
    Conserved Domains (3) summary
    cd00136
    Location:183252
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
    cd13168
    Location:309435
    PTB_LOC417372; uncharacterized protein LOC417372 Phosphotyrosine-binding (PTB) PH-like fold
    cl02689
    Location:35159
    RUN; RUN domain
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