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Items: 6

1.

Histone Modifications by ChIP-seq from ENCODE/University of Washington

(Submitter supplied) This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Richard Sandstrom mailto:sull@u.washington.edu). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). This track was produced as part of the ENCODE Project. This track displays genome-wide maps of histone modifications in different cell lines (http://hgwdev.cse.ucsc.edu/cgi-bin/hgEncodeVocab?type=cellType) using ChIP-seq high-throughput sequencing. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL9052
171 Samples
Download data: BIGWIG, BROADPEAK, NARROWPEAK
Series
Accession:
GSE35583
ID:
200035583
2.

Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)

(Submitter supplied) This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Terry Furey mailto:tsfurey@duke.edu). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). These tracks display DNaseI hypersensitivity (HS) evidence as part of the four Open Chromatin track sets. DNaseI is an enzyme that has long been used to map general chromatin accessibility, and DNaseI "hypersensitivity" is a feature of active cis-regulatory sequences. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL9052
97 Samples
Download data: BIGWIG, NARROWPEAK, TXT
Series
Accession:
GSE32970
ID:
200032970
3.

DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington

(Submitter supplied) This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Richard Sandstrom mailto:sull@u.washington.edu). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). This track is produced as part of the ENCODE Project. This track shows DNaseI sensitivity measured genome-wide in different cell lines using the Digital DNaseI methodology (see below), and DNaseI hypersensitive sites. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL9052 GPL9115
208 Samples
Download data: BAM, BIGWIG, BROADPEAK, NARROWPEAK
Series
Accession:
GSE29692
ID:
200029692
4.

Exon arrays of ENCODE tier 1, tier 2 and tier 3 cell types

(Submitter supplied) This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Richard Sandstrom mailto:sull@u.washington.edu). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). At cell harvest, a subset of cells was stored at -20oC in RNALater. Total RNA from 5 X 106 cells were purified using Ribopure (Ambion) according to vendor recommended protocols. more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL5188
182 Samples
Download data: BED, BROADPEAK, CEL
Series
Accession:
GSE19090
ID:
200019090
5.

ENCODE Tier2 cell phenotyping study

(Submitter supplied) These samples are part of the ENCODE consortium’s proposed time-limited Pilot Study for confirmation of the utility of RNA abundance measurements as a standard reference phenotyping tool. Keywords: cell type comparison For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL5175
26 Samples
Download data: CEL, CHP
Series
Accession:
GSE17778
ID:
200017778
6.

Duke-UNC-Texas-EBI ENCODE expression project

(Submitter supplied) These samples are being analyzed by the Duke-UNC-Texas-EBI ENCODE consortium. Expression from these cell types will compared to three whole genome open chromatin methodologies: DNaseI hypersensitivity (DNase-seq), Formaldehyde-Assisted Isolation of Regulatory elements (FAIRE-seq), and Chromatin Immunoprecipitation (ChIP-seq) . For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL15997
155 Samples
Download data: BED, CEL
Series
Accession:
GSE15805
ID:
200015805
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