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Items: 1 to 20 of 79

1.

mRNA-Seq of whole flies from Drosophila

(Submitter supplied) We sequenced mRNA from whole flies of females and male of Drosophila melanogaster, D. simulans, D. yakuba, D. ananassae, D. pseudobscura, D. mojavensis, and D. virilis as part of the modENCODE project to validate novel gene models found in D. melanogaster, identify genes differentially expressed between the sexes and sex-specific alternative splicing events, and examine the evolution of gene expression.
Organism:
Drosophila melanogaster; Drosophila pseudoobscura; Drosophila simulans; Drosophila yakuba; Drosophila ananassae; Drosophila mojavensis; Drosophila virilis
Type:
Expression profiling by high throughput sequencing
14 related Platforms
32 Samples
Download data: BAM, RPKM, TXT
Series
Accession:
GSE28078
ID:
200028078
2.

Dm_y[1]cn[1] bw[1] sp[1]_adult_Male_30dayPostEclosion_TotalRNA_p200_392-394-396_38bp

(Submitter supplied) modENCODE_submission_2897 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: CEL, GFF, GR
3.

Dm_y[1]cn[1] bw[1] sp[1]_adult_Female_30dayPostEclosion_TotalRNA_p200_398-400-402_38bp

(Submitter supplied) modENCODE_submission_2896 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: CEL, GFF, GR
4.

Dm_4dFVirginHead_TotalRNA_515_516_38bp

(Submitter supplied) modENCODE_submission_2342 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
2 Samples
Download data: CEL, GFF, GR
5.

Dm_1dFVirginHead_TotalRNA_497_498_38bp

(Submitter supplied) modENCODE_submission_2341 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
2 Samples
Download data: CEL, GFF, GR
6.

Dm_4dFMatedOvary_TotalRNA_531_532_38bp

(Submitter supplied) modENCODE_submission_2340 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
2 Samples
Download data: CEL, GFF, GR
7.

Dm_y[1]cn[1] bw[1] sp[1]_embryo_6-8h_TotalRNA_p200_230-232_38bp

(Submitter supplied) modENCODE_submission_763 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
2 Samples
Download data: GFF, GR
8.

Dm_S2-DRSC_polyApRNA_p200_479-480-481_38bp

(Submitter supplied) modENCODE_submission_718 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: CEL, GFF, GR
9.

Dm_C1.8_polyApRNA_p200_491_492_492_38bp

(Submitter supplied) modENCODE_submission_717 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: CEL, GFF, GR
10.

Dm_Bg3-c2_nuclearRNA_p200_488_489_490_38bp

(Submitter supplied) modENCODE_submission_716 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: CEL, GFF, GR
11.

Dm_S2-DRSC_nuclearRNA_p200_482-483-484_38bp

(Submitter supplied) modENCODE_submission_715 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: CEL, GFF, GR
12.

Dm_ML_BG3-c2_polyApRNA_p200_485-486-487_38bp

(Submitter supplied) modENCODE_submission_713 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: CEL, GFF, GR
13.

Dm_y[1]cn[1] bw[1] sp[1]_prepupa_WhitePrePupap12h_TotalRNA_p200_332-334-336_38bp

(Submitter supplied) modENCODE_submission_544 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: CEL, GFF, GR
14.

Dm_y[1]cn[1] bw[1] sp[1]_pupa_WhitePrePupaep2days_TotalRNA_p200_344-346-348_38bp

(Submitter supplied) modENCODE_submission_541 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: GFF, GR
15.

Dm_y[1]cn[1] bw[1] sp[1]_larval_L3-gut_stage2_TotalRNA_p200_444-446-450_38bp

(Submitter supplied) modENCODE_submission_540 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: CEL, GFF, GR
16.

Dm_y[1]cn[1] bw[1] sp[1]_larval_L3-gut-stage3_TotalRNA_p200_452-454-456_38bp

(Submitter supplied) modENCODE_submission_539 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: CEL, GFF, GR
17.

Dm_y[1]cn[1] bw[1] sp[1]_larval_L3-12hrPostMolt_TotalRNA_p200_296-298-300_38bp

(Submitter supplied) modENCODE_submission_538 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: CEL, GFF, GR
18.

Dm_y[1]cn[1] bw[1] sp[1]_embryo_4-6h_poly-Ap_p200_409-410-411_38bp

(Submitter supplied) modENCODE_submission_121 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: GFF, GR
19.

Dm_y[1]cn[1] bw[1] sp[1]_pupa_WhitePrePupaep1day_TotalRNA_p200_338-340-342_38bp

(Submitter supplied) modENCODE_submission_545 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array; Non-coding RNA profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: CEL, WIG
20.

Dm_y[1]cn[1] bw[1] sp[1]_pupa_WhitePrePupaep4day_TotalRNA_p200_356-358-360_38bp

(Submitter supplied) modENCODE_submission_543 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by genome tiling array; Non-coding RNA profiling by genome tiling array
Platform:
GPL6629
3 Samples
Download data: CEL, WIG
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