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Items: 9

1.

ORC2 KC-167 ChIP-Seq experiment

(Submitter supplied) modENCODE_submission_2755 This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will precisely identify sequence elements that direct DNA replication by using chromatin immunoprecipitation of known replication initiation complexes. These experiments will be conducted in multiple cell types and developmental tissues. more...
Organism:
Drosophila melanogaster
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL9058
3 Samples
Download data: BEDGRAPH, GFF3
Series
Accession:
GSE20889
ID:
200020889
2.

ORC2 ML-DmBG3-c2 ChIP-Seq experiment

(Submitter supplied) modENCODE_submission_2754 This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will precisely identify sequence elements that direct DNA replication by using chromatin immunoprecipitation of known replication initiation complexes. These experiments will be conducted in multiple cell types and developmental tissues. more...
Organism:
Drosophila melanogaster
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL9058
3 Samples
Download data: BEDGRAPH, GFF3
Series
Accession:
GSE20888
ID:
200020888
3.

ORC2 S2-DSRC ChIP-Seq experiment

(Submitter supplied) modENCODE_submission_2753 This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will precisely identify sequence elements that direct DNA replication by using chromatin immunoprecipitation of known replication initiation complexes. These experiments will be conducted in multiple cell types and developmental tissues. more...
Organism:
Drosophila melanogaster
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL9058
3 Samples
Download data: BEDGRAPH, GFF3
Series
Accession:
GSE20887
ID:
200020887
4.

ML-DmBG3-c2 Replication Origins

(Submitter supplied) modENCODE_submission_711 This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: Early origins of replication were identified by treating cells with hydroxyurea (HU), a potent inhibitor of nucleotide synthesis, in the presence of the nucleotide analogue BrdU. Treatment of synchronized ML-DmBG3-c2 cells with HU stalls replication forks and activates the intra S-phase checkpoint, thereby limiting BrdU incorporation to those sequences mmediately adjacent to early activating replication origins. more...
Organism:
Drosophila melanogaster
Type:
Other
Platform:
GPL7787
3 Samples
Download data: GFF, TXT, WIG
5.

S2-DRSC Replication Origins

(Submitter supplied) modENCODE_submission_710 This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: Early origins of replication were identified by treating cells with hydroxyurea (HU), a potent inhibitor of nucleotide synthesis, in the presence of the nucleotide analogue BrdU. Treatment of synchronized S2-DRSC cells with HU stalls replication forks and activates the intra S-phase checkpoint, thereby limiting BrdU incorporation to those sequences immediately adjacent to early activating replication origins. more...
Organism:
Drosophila melanogaster
Type:
Other
Platform:
GPL7787
3 Samples
Download data: GFF, TXT, WIG
6.

Kc167 Replication Origins

(Submitter supplied) modENCODE_submission_709 This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: Early origins of replication were identified by treating cells with hydroxyurea (HU), a potent inhibitor of nucleotide synthesis, in the presence of the nucleotide analogue BrdU. Treatment of synchronized Kc167 cells with HU stalls replication forks and activates the intra S-phase checkpoint, thereby limiting BrdU incorporation to those sequences immediately adjacent to early activating replication origins. more...
Organism:
Drosophila melanogaster
Type:
Other
Platform:
GPL7787
4 Samples
Download data: GFF, TXT, WIG
7.

ML-DmBG3-c2 Replication Timing

(Submitter supplied) modENCODE_submission_670 This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The relative time of replication for all unique sequences in the Drosophila genome was determined by synchronizing tissue culture cell and differentially labeling early and late replicating intermediates. The differentially labeled replication intermediates were then hybridized to Agilent genomic tiling arrays to identify early and late replicating domains. more...
Organism:
Drosophila melanogaster
Type:
Other
Platform:
GPL7787
3 Samples
Download data: TXT
8.

S2-DSRC Replication Timing

(Submitter supplied) modENCODE_submission_669 This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The relative time of replication for all unique sequences in the Drosophila genome was determined by synchronizing tissue culture cell and differentially labeling early and late replicating intermediates. The differentially labeled replication intermediates were then hybridized to Agilent genomic tiling arrays to identify early and late replicating domains. more...
Organism:
Drosophila melanogaster
Type:
Other
Platform:
GPL7787
3 Samples
Download data: TXT
9.

Kc167 Replication Timing

(Submitter supplied) modENCODE_submission_668 This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The relative time of replication for all unique sequences in the Drosophila genome was determined by synchronizing tissue culture cell and differentially labeling early and late replicating intermediates. The differentially labeled replication intermediates were then hybridized to Agilent genomic tiling arrays to identify early and late replicating domains. more...
Organism:
Drosophila melanogaster
Type:
Other
Platform:
GPL7787
3 Samples
Download data: TXT
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