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Items: 3

1.

CGH validation of de novo CNVs in asthma and CEU HapMap samples

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
Genome variation profiling by genome tiling array
Platforms:
GPL10780 GPL10779
60 Samples
Download data: PAIR, TXT
Series
Accession:
GSE23645
ID:
200023645
2.

Custom array CGH validation of de novo CNVs in CEU HapMap samples

(Submitter supplied) This is the validation data for candidate de novo CNV calls made in the CEU Hapmap by Itsara et al., Genome Research 2010. In this study, de novo CNV calls were initially made with Illumina 1M SNP arrays. Validation of CNV calls was performed with Nimblegen custom array CGH using the extended CEPH pedigrees. A truly de novo CNV would be unobserved in the first generation (CEU trio parents), validated in the second generation (CEU trio children), and assuming no selective effects, transmitted to approximately half of the individuals in the third generation. more...
Organism:
Homo sapiens
Type:
Genome variation profiling by genome tiling array
Platform:
GPL10780
36 Samples
Download data: PAIR, TXT
Series
Accession:
GSE23575
ID:
200023575
3.

Custom array CGH validation of de novo CNVs in asthma samples

(Submitter supplied) This is the validation data for candidate de novo CNV calls made in the asthma trios by Itsara et al., Genome Research 2010. In this study, de novo CNV calls in the asthma data set were initially made with Illumina 550K SNP arrays. Validation was performed with custom Nimblegen array CGH for which DNA was available. de novo CNVs would be expected to validate in the child of each trio tested, and not be detected in either parent.
Organism:
Homo sapiens
Type:
Genome variation profiling by genome tiling array
Platform:
GPL10779
24 Samples
Download data: PAIR, TXT
Series
Accession:
GSE23572
ID:
200023572
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