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Links from GEO DataSets

Items: 9

1.

Evolutionary principles of modular gene regulation in Yeasts

(Submitter supplied) Comparative time-series expression analysis of growth curves through carbon depletion in the ascomycete yeasts.
Organism:
Lachancea waltii; Saccharomyces cerevisiae; Schizosaccharomyces pombe; Candida albicans; [Candida] glabrata; Kluyveromyces lactis; Schizosaccharomyces japonicus; Naumovozyma castellii
Type:
Expression profiling by array
9 related Platforms
205 Samples
Download data: TXT
Series
Accession:
GSE38478
ID:
200038478
2.

Evolutionary principles of modular gene regulation in Yeasts

(Submitter supplied) Comparative time-series expression analysis of growth curves through carbon depletion in the ascomycete yeasts
Organism:
Debaryomyces hansenii; Vanderwaltozyma polyspora; Schizosaccharomyces japonicus; Saccharomyces bayanus; Candida albicans; Naumovozyma castellii; Saccharomyces paradoxus; Lachancea waltii; Saccharomyces cerevisiae; Yarrowia lipolytica; [Candida] glabrata; Kluyveromyces lactis; Saccharomyces mikatae; Lachancea kluyveri NRRL Y-12651; Schizosaccharomyces pombe; Lachancea kluyveri
Type:
Expression profiling by array
16 related Platforms
422 Samples
Download data: TXT
Series
Accession:
GSE36253
ID:
200036253
3.

Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana; Populus trichocarpa; Glycine max
Type:
Expression profiling by array
Platforms:
GPL11341 GPL4592 GPL198
48 Samples
Download data: CEL, CHP, PAIR
Series
Accession:
GSE26199
ID:
200026199
4.

Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max [Soy]

(Submitter supplied) The heat shock response continues to be layered with additional complexity as interactions and cross-talk among heat shock proteins, the reactive oxygen network and hormonal signaling are discovered. However, comparative analyses exploring variation in each of these processes among species remains relatively unexplored. In controlled environment experiments, photosynthetic response curves were conducted from 22 °C to 42 °C and indicated that temperature optimum of light saturated photosynthesis was greater for Glycine max relative to Arabidopsis thaliana or Populus trichocarpa. more...
Organism:
Glycine max
Type:
Expression profiling by array
Platform:
GPL4592
16 Samples
Download data: CEL, CHP
Series
Accession:
GSE26198
ID:
200026198
5.

Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max [Arabidopsis]

(Submitter supplied) The heat shock response continues to be layered with additional complexity as interactions and cross-talk among heat shock proteins, the reactive oxygen network and hormonal signaling are discovered. However, comparative analyses exploring variation in each of these processes among species remains relatively unexplored. In controlled environment experiments, photosynthetic response curves were conducted from 22 °C to 42 °C and indicated that temperature optimum of light saturated photosynthesis was greater for Glycine max relative to Arabidopsis thaliana or Populus trichocarpa. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by array
Platform:
GPL198
16 Samples
Download data: CEL
Series
Accession:
GSE26197
ID:
200026197
6.

Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max [Populus]

(Submitter supplied) The heat shock response continues to be layered with additional complexity as interactions and cross-talk among heat shock proteins, the reactive oxygen network and hormonal signaling are discovered. However, comparative analyses exploring variation in each of these processes among species remains relatively unexplored. In controlled environment experiments, photosynthetic response curves were conducted from 22 °C to 42 °C and indicated that temperature optimum of light saturated photosynthesis was greater for Glycine max relative to Arabidopsis thaliana or Populus trichocarpa. more...
Organism:
Populus trichocarpa
Type:
Expression profiling by array
Platform:
GPL11341
16 Samples
Download data: PAIR
Series
Accession:
GSE26195
ID:
200026195
7.

Temporal and Spatial Transcriptional Profiles of Aging in Drosophila

(Submitter supplied) Genetic analyses suggest that alterations in gene expression at the molecular and tissue levels can have profound effects on aging for multi-cellular organisms. However, much remains unknown about the normal pattern of genetic changes in different tissues and how these tissues interact during aging. To investigate tissue-specific aging systematically, we measured expression profiles of aging in Drosophila melanogaster in seven tissues representing nervous, muscular, digestive, renal, reproductive, and storage systems. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by array
Platform:
GPL4225
70 Samples
Download data
Series
Accession:
GSE6314
ID:
200006314
8.

Expression evolution in gene groups: Inferring non-neutral regulatory change in pathways from transcriptional profiling data

(Submitter supplied) We profiled the transcriptomes of four Saccharomyces species, as well as pairwise hybrids between three of the species with S. cerevisiae
Organism:
Saccharomyces mikatae; Saccharomyces cerevisiae x Saccharomyces bayanus; Saccharomyces paradoxus; Saccharomyces bayanus; Saccharomyces cerevisiae; Saccharomyces cerevisiae x Saccharomyces mikatae; Saccharomyces cerevisiae x Saccharomyces paradoxus
Type:
Expression profiling by high throughput sequencing
7 related Platforms
18 Samples
Download data: TXT
Series
Accession:
GSE38875
ID:
200038875
9.

Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering (S. cerevisiae, C. glabrata, K. lactis)

(Submitter supplied) Fungal infections are an emerging health risk, especially those involving yeast that are resistant to antifungal agents. To understand the range of mechanisms by which yeasts can respond to anti-fungals, we compared gene expression patterns across three evolutionarily distant species - Saccharomyces cerevisiae, Candida glabrata and Kluyveromyces lactis - over time following fluconazole exposure. Conserved and diverged expression patterns were identified using a novel soft clustering algorithm that concurrently clusters data from all species while incorporating sequence orthology. more...
Organism:
[Candida] glabrata; Kluyveromyces lactis; Saccharomyces cerevisiae
Type:
Expression profiling by array
Platforms:
GPL8451 GPL7293 GPL8452
90 Samples
Download data: GPR
Series
Accession:
GSE15710
ID:
200015710
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