GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Capsaspora owczarzaki; Ephydatia muelleri; Mnemiopsis leidyi; Hormiphora californensis; Sphaeroforma arctica; Trichoplax adhaerens; Nematostella vectensis; Salpingoeca rosetta; Cladtertia collaboinventa

Type:

Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other

14 related Platforms

52 Samples

Download data: BED, BEDGRAPH, BW, MCOOL, PAIRS, TXT, XLSX

(Submitter supplied) We characterised the genome organization in non-bilaterian animals (sponge Ephydatia muelleri, ctenophores Mnemiopsis leidyi and Hormiphora californensis, placozoans Trichoplax adhaerens and Cladtertia collaboinventa, and cnidarian Nematostella vectensis) and close unicellular relatives (ichthyosporeans Sphaeroforma arctica, filasterean Capsaspora owczarzaki and choanoflagellate Salpingoeca rosetta) by combining high-resolution chromosome conformation capture (Micro-C) with profiling of chromatin marks (ChIP-seq), accessible genomic regions (ATAC-seq) and gene expression (MARS-seq).

Organism:

Capsaspora owczarzaki; Sphaeroforma arctica; Ephydatia muelleri; Mnemiopsis leidyi; Hormiphora californensis; Trichoplax adhaerens; Nematostella vectensis; Salpingoeca rosetta; Cladtertia collaboinventa

Type:

Other

9 related Platforms

9 Samples

Download data: BED, BEDGRAPH, MCOOL, PAIRS, TXT

(Submitter supplied) We characterised the genome organization in non-bilaterian animals (sponge Ephydatia muelleri, ctenophores Mnemiopsis leidyi and Hormiphora californensis, placozoans Trichoplax adhaerens and Cladtertia collaboinventa, and cnidarian Nematostella vectensis) and close unicellular relatives (ichthyosporeans Sphaeroforma arctica, filasterean Capsaspora owczarzaki and choanoflagellate Salpingoeca rosetta) by combining high-resolution chromosome conformation capture (Micro-C) with profiling of chromatin marks (ChIP-seq), accessible genomic regions (ATAC-seq) and gene expression (MARS-seq).

Organism:

Sphaeroforma arctica; Capsaspora owczarzaki; Trichoplax adhaerens; Cladtertia collaboinventa; Ephydatia muelleri; Mnemiopsis leidyi; Nematostella vectensis; Salpingoeca rosetta

Type:

Genome binding/occupancy profiling by high throughput sequencing

8 related Platforms

34 Samples

Download data: BW

(Submitter supplied) 5-methylcytosine (5mC) is a widespread silencing mechanism that controls genomic parasites. However, in many eukaryotes 5mC has gained complex roles in gene regulation beyond parasite control. Animals are a paradigmatic case for 5mC evolution, as they show widespread variability across lineages, ranging from gene regulation and transposable element control to loss of this base modification. Here we show that the protist animal relative Amoebidium appalachense displays both transposon and gene body methylation, a pattern reminiscent of invertebrates and plants. more...

Organism:

Creolimax fragrantissima; Sphaeroforma arctica; Amoebidium appalachense; Ichthyosporea sp. XGB-2017a; Amoebidium parasiticum

Type:

Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

5 related Platforms

50 Samples

Download data: CGMAP, TSV, TXT

(Submitter supplied) PRO-seq experiments in multiple organisms. Also, PRO-seq experiment of Nelfb and Nelfe degron mESC in serum/LIF with or without dTAG-13. 

Organism:

Haloferax mediterranei; Dryas iulia; Nematostella vectensis; Escherichia coli; Mus musculus; Perkinsus marinus; Daphnia pulex; Strongylocentrotus purpuratus; Sphaeroforma arctica; Dictyostelium discoideum; Capsaspora owczarzaki; Creolimax fragrantissima

Type:

Other

12 related Platforms

46 Samples

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