GEO DataSets

(Submitter supplied) Puccinia graminis f.sp. tritici (Pgt), the causal agent of stem rust disease in wheat, is one of the most destructive pathogens and can cause severe yield losses. Here, we utilize Hi-C sequencing technology to scaffold and phase the haplotypes for the genome assembly of a US Pgt isolate 99KS76A-1.

Organism:

Puccinia graminis f. sp. tritici

Type:

Other

Platform:

GPL32547

1 Sample

Download data: HIC

(Submitter supplied) Transcriptomic profiling was done on barley samples incoulated with different Puccinia graminis f. sp. tritici (Pgt) isolates of varying virulence profile on barley stem rust resistance gene rpg4/5 and Rpg1. Several differentally expressed host and pathogen genes were identified while comparing gene expression profiles between group of samples inoculated with isoaltes of varying virulence. Several variants with genes of pathogen were idnetified that are possibly associated with virulence to rpg4/5.

Organism:

Hordeum vulgare; Puccinia graminis f. sp. tritici

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL26586 GPL26320

27 Samples

Download data: CSV

(Submitter supplied) Puccinia graminis f. sp. tritici is the cause of wheat stem rust. A microarray was designed from genes predicted from the P. graminis f. sp. tritici genome assembly, and gene expression measured for four conditions which include wheat or barley infecting growth stages initiated by urediniospores. mRNA was prepared from fresh urediniospores, uredinospores germinated for 24 hr, wheat seedlings infected with urediniospores for 8 days, and barley seedlings infected with urediniospores for 8 days. more...

Organism:

Puccinia graminis f. sp. tritici

Type:

Expression profiling by array

Platform:

GPL11144

12 Samples

Download data: PAIR

(Submitter supplied) A Nimblegen custom microarray was designed based on the predicted gene set of Puccinia graminis f. sp. tritici. NimbleGen design name: 080215_PG_CC_EXP. NimbleGen design id: 7123. A custom expression design for 20,228 genes from Puccinia graminis f. sp tritici, based on the first Broad annotation of this genome [Puccinia triticina genome project: http://www.broadinstitute.org/annotation/genome/puccinia_group/MultiHome.html]. more...

Organism:

Puccinia graminis f. sp. tritici

1 Series

12 Samples

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