txid54126[Organism:noexp] - GEO DataSets

Search results

Items: 1 to 20 of 86

<< First< Prev

Page of 5

Select item 2002809111.

Somatic polyploidy supports biosynthesis and tissue function by increasing transcriptional output [RNA-seq]

(Submitter supplied) Cell size and biosynthetic capacity generally increase with increased DNA content. Somatic polyploidy has therefore been proposed to be an adaptive strategy to increase cell size in specialized tissues with high biosynthetic demands. However, if and how DNA concentration limits cellular biosynthesis in vivo is not well understood. Here, we show that polyploidy in the C. elegans intestine is critical for cell growth and yolk biosynthesis, a central role of this organ. more...

Organism:: Pristionchus pacificus; Caenorhabditis elegans

Type:: Expression profiling by high throughput sequencing

Platform:: GPL35070
6 Samples

Download data: TSV

Series

Accession:: GSE280911

ID:: 200280911

Select item 2002679632.

SMC-mediated dosage compensation in C. elegans evolved in the presence of an ancestral nematode mechanism [Hi-C]

(Submitter supplied) Mechanisms of X chromosome dosage compensation have been studied extensively in a few model species representing clades of shared sex chromosome ancestry. However, the diversity within each clade as a function of sex chromosome evolution is largely unknown. Here, we anchor ourselves to the nematode Caenorhabditis elegans, for which a well-studied mechanism of dosage compensation occurs through a specialized structural maintenance of chromosomes (SMC) complex, and explore the diversity of dosage compensation in the surrounding phylogeny of nematodes. more...

Organism:: Pristionchus pacificus; Oscheius tipulae

Type:: Other

Platforms:: GPL34494 GPL32681
4 Samples

Download data: HIC

Series

Accession:: GSE267963

ID:: 200267963

Select item 2002679623.

SMC-mediated dosage compensation in C. elegans evolved in the presence of an ancestral nematode mechanism [ChIP-Seq]

Organism:: Pristionchus pacificus; Oscheius tipulae

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL34492 GPL34493
16 Samples

Download data: BW

Series

Accession:: GSE267962

ID:: 200267962

Select item 2000566514.

Small RNA sequencing study of the nematode phylum

(Submitter supplied) Comparison of small RNA profiles across nematode evolution

Organism:: Romanomermis culicivorax; Nippostrongylus brasiliensis; Hypsibius dujardini; Brugia malayi; Globodera pallida; Pristionchus pacificus; Enoplus brevis; Paragordius varius; Caenorhabditis elegans; Trichinella spiralis; Odontophora rectangula

Type:: Non-coding RNA profiling by high throughput sequencing

11 related Platforms
22 Samples

Download data: FA, FASTA

Series

Accession:: GSE56651

ID:: 200056651

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000531445.

Male and Female DNA and RNA sequencing in several nematode species

(Submitter supplied) The overall goal of this investigation was to investigate X-content of sex-biased genes in several nematode species. The following species of nematode were investigated: *C. elegans, *N2; *C. brenneri, *PB2801; *C. briggsae, *AF16; *C. remanei*, PB4641; *P. **pacificus, *PS312*.* Genomic DNA sequencing data was used to assign X and autosomal - linkage to unassembled sequencing contigs. Male and female RNA seq data was then generated and used to determine sex-biased expression. more...

Organism:: Caenorhabditis briggsae; Caenorhabditis brenneri; Caenorhabditis remanei; Caenorhabditis elegans; Pristionchus pacificus

Type:: Expression profiling by high throughput sequencing; Other

5 related Platforms
31 Samples

Download data: BEDGRAPH, FPKM_TRACKING

Series

Accession:: GSE53144

ID:: 200053144

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000414026.

microRNAs in C. elegans, P. pacificus, and S. ratti: Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes

(Submitter supplied) Animal development is complex yet surprisingly robust. Animals may develop alternative phenotypes conditional on environmental changes. Under unfavorable conditions C. elegans larvae enter the dauer stage, a developmentally arrested, long-lived, and stress-resistant state. Dauer larvae of free-living nematodes and infective larvae of parasitic nematodes share many traits including a conserved endocrine signaling module (DA/DAF-12), which is essential for the formation of dauer and infective larvae. more...

Organism:: Caenorhabditis elegans; Strongyloides ratti; Pristionchus pacificus

Type:: Non-coding RNA profiling by high throughput sequencing

7 related Platforms
10 Samples

Download data: TXT

Series

Accession:: GSE41402

ID:: 200041402

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000373377.

Immune response of germline-ablated P. pacificus exposed to S. marcescens

(Submitter supplied) Transcriptional profiling of germline-ablated P. pacificus worms exposed to S. marcescens for 8 hours versus germline-ablated P. pacificus exposed to the control E. coli OP50. First goal was to identify genes that are involved in immune response of germline-ablated P. pacificus when exposed to S. marcescens. Second, this was compared to longevity-regulating genes in germline-deficient animals (see series GSE37331).

Organism:: Pristionchus pacificus

Type:: Expression profiling by array

Platform:: GPL14372
4 Samples

Download data: GPR

Series

Accession:: GSE37337

ID:: 200037337

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000373318.

Effect of germline ablation in the nematode P. pacificus

(Submitter supplied) Transcriptional profiling of germline-ablated P. pacificus worms versus un-ablated wild-type controls. Food source E. coli OP50 for both conditions. The goal was to identify genes that regulate the enhanced longevity observed in germline-deficient animals.

Organism:: Pristionchus pacificus

Type:: Expression profiling by array

Platform:: GPL14372
3 Samples

Download data: GPR

Series

Accession:: GSE37331

ID:: 200037331

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000366449.

Pristionchus pacificus and Caenorhabditis elegans: Dauer and Dauer exit versus mix-stage comparisons

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Pristionchus pacificus; Caenorhabditis elegans

Type:: Expression profiling by array

Platforms:: GPL14372 GPL10094
15 Samples

Download data: GPR

Series

Accession:: GSE36644

ID:: 200036644

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003652310.

P. pacificus young adults: Exposed to Xenorhabdus nematophila versus exposed to E. coli OP50 : 4 hours

(Submitter supplied) Transcriptional profiling of P. pacificus young adult worms exposed to pathogen Xenorhabdus nematophila for 4 hours versus age-matched worms exposed to control lab food E. coli OP50. The goal was to identify genes regulated in response to pathogen. The broader goal of study was to study evolution of pathogen response by comparing this expression profile to that obtained by exposing the nematode C. elegans to the same pathogen. more...

Organism:: Pristionchus pacificus

Type:: Expression profiling by array

Platform:: GPL14372
4 Samples

Download data: GPR

Series

Accession:: GSE36523

ID:: 200036523

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003652111.

P. pacificus young adults: Exposed to Serratia marcescens versus exposed to E. coli OP50 : 4 hours

(Submitter supplied) Transcriptional profiling of P. pacificus young adult worms exposed to pathogen Serratia marcescens for 4 hours versus age-matched worms exposed to control lab food E. coli OP50. The goal was to identify genes regulated in response to pathogen. The broader goal of study was to study evolution of pathogen response by comparing this expression profile to that obtained by exposing the nematode C. elegans to the same pathogen. more...

Organism:: Pristionchus pacificus

Type:: Expression profiling by array

Platform:: GPL14372
4 Samples

Download data: GPR

Series

Accession:: GSE36521

ID:: 200036521

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003651912.

P. pacificus young adults: Exposed to Staphylococcus aureus versus exposed to E. coli OP50 : 4 hours

(Submitter supplied) Transcriptional profiling of P. pacificus young adult worms exposed to pathogen Staphylococcus aureus for 4 hours versus age-matched worms exposed to control lab food E. coli OP50. The goal was to identify genes regulated in response to pathogen. The broader goal of study was to study evolution of pathogen response by comparing this expression profile to that obtained by exposing the nematode C. elegans to the same pathogen. more...

Organism:: Pristionchus pacificus

Type:: Expression profiling by array

Platform:: GPL14372
3 Samples

Download data: GPR

Series

Accession:: GSE36519

ID:: 200036519

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003651713.

P. pacificus young adults: Exposed to Bacillus thuringiensis DB27 versus exposed to E. coli OP50 : 4 hours

Organism:: Pristionchus pacificus

Type:: Expression profiling by array

Platform:: GPL14372
4 Samples

Download data: GPR

Series

Accession:: GSE36517

ID:: 200036517

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003663614.

P. pacificus and C. elegans exposed to various pathogens

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Pristionchus pacificus; Caenorhabditis elegans

Type:: Expression profiling by array

Platforms:: GPL10094 GPL14372
30 Samples

Download data: GPR

Series

Accession:: GSE36636

ID:: 200036636

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003186115.

P. pacificus : Dauers and Dauer-Exit at 12 hour time-point vs. Mix-stage worms

(Submitter supplied) Transcriptional profiling of P. pacificus worms from (1) dauer stage, or (2) dauer-exit at 12 hours stage, compared to mix-stage worms as a common reference. The goal was to determine genes regulated during dauer development and recovery or exit from dauer stage. This data was then compared to data generated for corresponding developmental stages in the C. elegans (see NCBI GEO series GSE30977) , to study evolution of developmental pathways regulating dauer development.

Organism:: Pristionchus pacificus

Type:: Expression profiling by array

Platform:: GPL14372
7 Samples

Download data: GPR

Series

Accession:: GSE31861

ID:: 200031861

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20001516916.

Repertoire and evolution of miRNA genes in four divergent nematode species

(Submitter supplied) We have performed small RNA sequencing in the nematodes Caenorhabditis elegans, C. briggsae, C. remanei and Pristionchus pacificus, which have diverged up to 400 million years ago, to establish the repertoire and evolutionary dynamics of miRNAs in these species. In addition to previously known miRNA genes from C. elegans and C. briggsae we demonstrate expression of many of their homologs in C. remanei and P. more...