GEO DataSets

(Submitter supplied) Next generation sequencing (NGS) was performed to identify genes changed in ginseng upon Botrytis cinerea △BcSpd1 treatment. The goal of the work is to find interesting genes involved in ginseng in response to fungi induction. The object is to reveal the molecular mechanism of ginseng defense induced by Botrytis cinerea △BcSpd1 .

Organism:

Panax ginseng

Type:

Expression profiling by high throughput sequencing

Platform:

GPL25794

9 Samples

Download data: XLSX

(Submitter supplied) Next-generation sequencing (NGS) was performed to identify genes changed in ginseng upon Colletotrichum panacicola infection. The goal of the work is to find interesting genes involved in ginseng in response to fungi induction. The object is to reveal the molecular mechanism of ginseng disease development caused by Colletotrichum panacicola.

Organism:

Panax ginseng

Type:

Expression profiling by high throughput sequencing

Platform:

GPL25794

9 Samples

Download data: XLSX

(Submitter supplied) Next generation sequencing (NGS) was performed to identify genes changed in ginseng upon Botrytis cinerea infection. The goal of the work is to find interesting genes involved in medical plant in response to fungi infection. The object is to reveal the molecular mechanism of medical plant defense.

Organism:

Panax ginseng

Type:

Expression profiling by high throughput sequencing

Platform:

GPL25794

6 Samples

Download data: TXT

(Submitter supplied) Panax ginseng C.A. Meyer is a precious Chinese herbal medicine belonging to the Araliaceae family. Because ginseng is extremely taboo, it seriously restricts the sustainable development of the ginseng industry. The allelopathic effect of triterpenoid saponins is one of the important incentives for continuous cropping disorders. However, there are few studies on the mechanism of allelopathic autotoxicity of triterpenoid ginsenosides. more...

Organism:

Panax ginseng

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32600

6 Samples

Download data: FASTA, XLSX

(Submitter supplied) Purpose: Panax vietnamensis Ha et Grushv., which contains various valuable ginsenosides, is an important herbal medicine of Vietnam. However, it is an endangered species listed in Vietnam Red Data Book due to over-harvseting. Investigation about genomic or trancriptomic resources is one of the necessary activities to conserve P. vietnamensis Materials and Methods:. In this study, we sequenced the transcriptomes of 1-year-old P. more...

Organism:

Panax vietnamensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29984

6 Samples

Download data: FASTA, TXT

(Submitter supplied) Nitrogen is one of the essential elements for plant growth. NH4+ and NO3- are two major forms of absorbing element N for higher plants. In this study we found that the growth of Panax notoginseng is inhibited when only adding ammonium nitrogen fertilizer, and adding nitrate fertilizer can alleviate the toxicity caused by ammonium. We use RNA-seq to identify genes that are related to the alleviated phenotypes after introducing NO3- to Panax notoginseng roots under NH4+ stresses. more...

Organism:

Panax notoginseng

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23359

12 Samples

Download data: FA, XLSX

(Submitter supplied) The total RNA were extracted from tissues of roots from several plants of Panax notoginseng under CK and Cd stress treatment by using TRIzol reagent (Invitrogen) according to the manufacturer's instructions. The purified PCR product was sequenced using Illumina Genome Analyzer II. The qualified reads were used to study of Panax notoginseng transcriptome under CK and Cd stress treatment.

Organism:

Panax notoginseng

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23359

2 Samples

Download data: FA, TXT, XLSX

(Submitter supplied) We reported the first study of transcriptome analyses using the Illumina HiSeq4000 platform for low temperature stress on callus of Panax ginseng. In total, over 546,139,358 clean reads were produced and 44,953 unigenes were assembled; Q30 results are above 95%. Differentially Expressed Gene analysis identified 9,435 and 6,345 unigenes which were expressed either higher or lower in treatment group samples(T) when compared with control group (C). more...

Organism:

Panax ginseng

Type:

Expression profiling by high throughput sequencing

Platform:

GPL25794

12 Samples

Download data: FASTA, TXT

(Submitter supplied) Recent results demonstrated that either non-coding or coding genes generate phased secondary small interfering RNAs (phasiRNAs) guided by specific miRNAs. Till now, there is no studies for phasiRNAs in Panax notoginseng (Burk.) F.H. Chen (P. notoginseng), an important traditional Chinese herbal medicinal plant species. Here we performed a genome-wide discovery of phasiRNAs and its host PHAS loci in P. more...

Organism:

Panax notoginseng

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL23359

7 Samples

Download data: TXT

(Submitter supplied) In this study, we have performed Illumina based RNA sequencing to characterize the transcriptome and expression profiles of genes expressed in 5 tissues of P. japonicus. RNA sequencing and de novo transcriptome assembly for P. japonicus resulted in a total of 135,235 unigenes with 78,794 (58.24%) unigenes being annotated using NCBI-nr database. Transcriptome profile and GO enrichment analysis for 5 tissues of P. more...

Organism:

Panax japonicus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL21562

5 Samples

Download data: TXT