GEO DataSets

(Submitter supplied) This study characterizes the transcriptomic alterations of Tuber melanosporum during fruiting body development. Stage III, IV, V and VI were analyzed. For images and description of stages see Zarivi et al.2015 (https://doi.org/10.1016/j.phytochem.2015.02.024)

Organism:

Tuber melanosporum

Type:

Expression profiling by array

Platform:

GPL8982

4 Samples

Download data: PAIR

(Submitter supplied) We investigated the ascomycete truffle Tuber melanosporum exploits DNA methylation and transcription to cope with the more than 45,000 repeated elements that are present in its genome. Whole-genome bisulfite sequencing and RNA-sequencing, were performed on different developmental stages of this symbiotic hypogeous fungus -fruitbody (FB), free-living mycelium (FLM), and ectomycorrhiza.

Organism:

Tuber melanosporum

Type:

Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

Platform:

GPL17552

9 Samples

Download data: TXT

(Submitter supplied) The aim of this analysis was to better understand the complex symbiotic stage of Tuber melanosporum by combining the use of laser capture microdissection and microarray gene expression analysis. We isolated the fungal/soil (i.e. the mantle) and the fungal/plant (i.e. the Hartig net) interfaces from transverse sections of T. melanosporum/Corylus avellana ectomycorrhizas and identified the transcriptional landscape associated with each compartment. more...

Organism:

Corylus avellana; Tuber melanosporum

Type:

Expression profiling by array

Platform:

GPL8982

6 Samples

Download data: PAIR

(Submitter supplied) Taking advantage of the availability of the Tuber melanosporum genome sequence and a whole-genome microarray, we wanted to test the hypothesis that the transition from a growth temperature of 24-25°C to a cold one (4°C) is perceived by the filamentous fungus at the transcriptomic level and we wanted to identify and characterize the genes involved in this stress response.

Organism:

Tuber melanosporum

Type:

Expression profiling by array

Platform:

GPL8982

6 Samples

Download data: PAIR, TXT

(Submitter supplied) The Transcriptome of different tissues and developmental stages of Tuber melanosporum was analyzed. The array probes were designed from gene models taken from the French Genoscope - Centre National de Séquençage Tuber melanosporum genome sequence version 1. One aim of this study was to verify the expression of the automatically annotated gene models in various tissues and to use this transcriptional information to confirm, to correct or to reject gene models. more...

Organism:

Corylus avellana; Tuber melanosporum

Type:

Expression profiling by array

Platform:

GPL8982

16 Samples

Download data: TXT

(Submitter supplied) This is a condensed platform of the full array which has probes designed from gene models taken from the Genoscope - Centre National de Séquençage Tuber melanosprum genome sequence version 1.0 Protocol: Propriety in situ oligonucleotide synthesis

Organism:

Tuber melanosporum

4 Series

29 Samples

Download data: NDF